Table 2.
Assemblages and sub-assemblages of G. duodenalis determined by the three genes
| Study site | Isolate code | Children | Assemblages and sub-assemblages | |||
|---|---|---|---|---|---|---|
| Sex | Age | tpi | bg | gdh | ||
| Holetta | HH-02 | F | 5-14 years | B (B2) | B | B* |
| HH-06 | F | 5-14 years | AII | AII | AII | |
| HH-13 | M | <5 years | B* | B | – | |
| HH-25 | M | 5–14 years | AII | AII | – | |
| HH-34 | M | 5–14 years | B (B2) | B | – | |
| HH-49 | M | 5–14 years | B | B* | B* | |
| HH-55 | M | 5–14 years | – | A (A3) | – | |
| HH-57 | M | <5 years | – | A (A3) | – | |
| HH-70 | F | 5–14 years | B (B2) | B (B3) | B* | |
| HH-71 | M | <5 years | B* | B | B* | |
| HH-72 | M | <5 years | B* | B (B3) | B* | |
| HH-78 | M | 5–14 years | B* | – | – | |
| HH-80 | M | 5–14 years | AII | – | – | |
| HH-84 | F | <5 years | B (WB9) | B | B* | |
| HH-93 | M | 5–14 years | AII | AII | AII | |
| Sendafa | SH-03 | F | 5–14 years | B (B2) | - | BIV |
| SH-12 | M | 5–14 years | B (B2) | B* | B* | |
| SH-14 | M | 5–14 years | B | B* | B* | |
| SH-18 | M | 5–14 years | B | B (B3) | B* | |
| SH-20 | M | <5 years | AII | AII | AII | |
| SH-33 | F | 5–14 years | AII | AII | AII | |
| SH-35 | F | 5–14 years | B (B2) | B (B3) | B* | |
| SH-38 | M | 5–14 years | AII | AII | – | |
| SH-43 | F | <5 years | B (WB8) | B (B3) | B* | |
| SH-48 | F | 5–14 years | B | – | – | |
| SH-49 | M | 5–14 years | B (B2) | B* | B* | |
| SH-51 | F | <5 years | B | – | – | |
| SH-54 | M | 5–14 years | B (B2) | B | B* | |
| SH-69 | M | 5–14 years | AII | AII | AII | |
| SH-74 | M | 5–14 years | B (B2) | – | – | |
| SH-75 | F | 5–14 years | B | B | B* | |
| SH-82 | M | 5–14 years | AII | AII | AII | |
| SH-83 | F | 5–14 years | B* | B | B* | |
| SH-92 | M | 5–14 years | B (WB9) | B | B* | |
| SH-93 | F | 5–14 years | B (B2) | B | B* | |
| Chancho | CH-20 | F | 5–14 years | B (B2) | – | – |
| CH-26 | F | 5–14 years | B (WB9) | B (B3) | B* | |
| CH-36 | F | 5–14 years | B* | B (B3) | – | |
| CH-37 | F | 5–14 years | B* | B | – | |
| CH–40 | M | 5–14 years | B* | B (B3) | – | |
| CH-44 | M | 5–14 years | B (B2) | B | B* | |
| CH-49 | F | 5–14 years | B* | – | – | |
| CH-55 | M | <5 years | B (B2) | B | B* | |
| DH-07 | F | 5–14 years | – | B | B* | |
| DH-08 | F | 5–14 years | B (B2) | B | – | |
| DH-11 | M | 5–14 years | B (B2) | – | – | |
| DH-17 | M | 5–14 years | B | B | – | |
| DH-21 | M | 5–14 years | B (B2) | B (B3) | – | |
Key: Asterisks (*) indicate novel genotypes; hyphens (–) indicate PCR-negative results
The sub-assemblages B2, B3, WB9 and WB8 were based on the BLAST results