Table 1.

Species used and accession numbers for their genomes and target genes

Species (abbr)	Genome	16S rRNA	RpoB	Lrp	AsnC	RecA
Enterobacteriales
Citrobacter youngae (Cyo)	GG730299.1*	AB273741	EFE05379.1	EFE08594.1	EFE06470.1	EFE06891.1
Dickeya dadantii (Dda)	CP002038.1	AF520707	WP_038900031.1	ADM98245.1	WP_038921215.1	WP_013319098.1
Escherichia coli (Eco)	NC_000913.3	NR_102804.1	NP_418414.1	NP_415409.1	NP_418199.1	AIZ90260.1
Klebsiella pneumoniae (Kpn)	APVW01000146.1*	AF394537	CDQ52107.1	EOZ13501.1	B5XZL3_KLEP3	KFJ75935.1
Photorhabdus asymbiotica (Pas)	FM162591.1	NR_029093.1	CAQ82443.1	CAQ84933.1	KGM25900.1	CAQ85300.1
Proteus mirabilis (Pmi)	Y10417.1*	KM099410.1	KGA91942.1	CAA71443.1	B4F0D6_PROMH	KGY45908.1
Salmonella enterica Typhimurium (Sty)	NC_003197.1	DQ344537	AAF33499.1	NP_459935.1	NP_462775.1	NP_461750.1
Serratia marcescens (Sma)	U02276.1*	AF124036	KHO40608.1	AAA75466.1	KMJ03309.1	WP_015670993.1
Yersinia enterocolitica (Yen)	CP009367.1	NR_074308.1	AJJ28227.1	AJI83973.1	AHM76528.1	AJJ25926.1
Yersinia pestis (Ype)	AL590842.1	NR_074199.1	CAL22334.1	CAL20027.1	YP_002345098.1	CAL21898.1
Vibrionales
Grimontia indica (Gin)	NZ_ANFM02000022.1*	FJ943235	EOD77459.1	WP_002539165.1	WP_002541578.1	WP_002537588.1
Photobacterium aphoticum (Pap)	BBMN01000005.1*	X74685	Q6LLW2.1	GAL04870.1	GAL07747.1	GAL08267.1
Vibrio anguillarium (Van)	CP002284.1	X71817	CDQ49128.1	AEH33539.1	CDQ51588.1	P26348.1
Vibrio campbelli (Vca)	JSFE01000003.1*	DQ980029	A7MXF1.1	KGR35110.1	KGR34405.1	WP_045384581.1
Vibrio cholerae N16961(Vch)	AE003852.1	AE004119	Q9KV30.2	AAF95052.1	NP_229730.1	P45383.1
Vibrio fischeri (Vfi)	NC_006840.2	CP000020	YP_205797.2	YP_204287.1	YP_203464.1	YP_203918.1
Vibrio icthyoenteri (Vic)	AFWF01000031.1*	HM771339	EGU40820.1	EGU46924.1	EGU37343.1	EGU37265.1
Vibrio splendidus (Vsp)	CH724173.1*	AJ515230	WP_029224582.1	EAP92110.1	EAP95563.1	WP_029225094.1
Vibrio variabilis (Vva)	JRWM01000006.1*	GU929924	KHA59154.1	KHA61343.1	GAL25042.1	GAL30153.1
Vibrio vulnificus (Vvu)	BA000037.2	BA000037	KFK71115.1	BAC94085.1	NP_932862.1	AIL71594.1
Pasteurellales
Actinobacillus succinogenes (Asu)	CP000746.1	NR_074818.1	A6VKC5.1	ABR74465.1	WP_012072259.1	WP_011978916.1
Aggregatibacter actinomycetem-comitans (Aac)	NZ_CP007502.1	CP003496	EKX96954.1	WP_005540269.1	WP_005548336.1	Q9JRP9.1
Avibacterium paragallinarum (Apa)	NZ_AFFP02000001.1*	AY498868	KKB02504.1	WP_017806582.1	WP_017806647.1	KKB01216.1
Chelonobacter oris (Cor)	NZ_JSUM01000003.1*	EU331064	KGQ69613.1	WP_034612909.1	WP_034615444.1	KGQ69536.1
Gallibacterium genomo (Gge)	NZ_JPXX01000021.1*	AF228015	WP_039172822.1	WP_039173617.1	WP_013745649.1	KGQ37099.1
Haemophilus ducreyi (Hdu)	NC_002940.2	M63900	Q7VKL7.1	WP_010945324.1	WP_041603575.1	AAP95375.1
Haemophilus Influenzae (Hin)	JFZK01000018.1	M35019	AJO91604.1	KAI97579.1	WP_005649540.1	AJO91526.1
Mannheimia haemolytica (Mha)	NZ_CP006957.1	NR_102832.1	AKA12987.1	WP_006251058.1	WP_006248981.1	AAD53288.1
Necropsobacter rosorum (Nro)	NZ_CCMQ01000006.1*	NR_114428.1	WP_032093555.1	WP_032092886.1	WP_032093497.1	WP_032093315.1
Pasteurella multocida (Pmu)	NZ_CP008918.1	NR_103916.1	AAK03821.1	WP_005721107.1	WP_005718316.1	P95526.1
Alteromonadales
Ferrimonas futtsuensis (Ffu)	NZ_KE383896.1	AB245515	WP_028110712.1	WP_028108266.1	WP_028110962.1	WP_028109920.1
Ferrimonas senticii (Fse)	NZ_AUGM01000029	DQ778094	WP_028117235.1	WP_028115272.1	WP_028117739.1	WP_028117049.1
Idiomarina sp. A28L (Isp)	AFPO01000011.1*	FJ404759	EGN75162.1	EGN75753.1	WP_007420625.1	EGN75701.1
Moritella dasanensis (Mda)	NZ_AKXQ01000041.1*	EF192283.1	WP_017222504.1	WP_017223704.1	WP_017222470.1	WP_017221889.1
Pseudoalteromonas luteoviolacea (Plu)	NZ_AUSV01000032.1*	X82144	KID54553.1	WP_023398863.1	WP_023399751.1	ESP93629.1
Pseudoalteromonas tunicata (Ptu)	NZ_CH959301.1*	DQ005908	EAR26370.1	WP_009839786.1	WP_009840643.1	WP_009837615.1
Psychromonas aquimarina (Paq)	NC_008709.1	AB304805	WP_028863208.1	WP_011771837.1	WP_028864437.1	WP_028864512.1
Shewanella frigidimarina (Sfr)	NC_008345.1	NR_074814.1	WP_011635633	WP_011637260.1	WP_011636002.1	Q086A0.1
Shewanella loihica (Slo)	CP000606.1	NR_074815.1	ABO22023.1	ABO23891.1	WP_014609941.1	ABO23085.1
Shewanella pealeana (Spe)	NC_009901.1	NR_074821.1	A8GYW9.1	WP_012155470.1	WP_012154000.1	ABV86522.1

*contigs and/or full genome were not available at time of writing