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. 2016 Apr 8;7:480. doi: 10.3389/fmicb.2016.00480

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Copyright © 2016 Falentin, Rault, Nicolas, Bouchard, Lassalas, Lamberton, Aubry, Marnet, Le Loir and Even.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Taxonomic representation of differentially abundant taxa between Cluster 1 (contains quarters susceptible to mastitis) and Cluster 2 (contains healthy quarters), as determined by the LEfSe pipeline. Differences are represented by the color of the cluster where the taxon is more abundant (red indicates Cluster 1 and green indicates Cluster 2). The diameter of each circle is proportional to the abundance of the taxon. (A) Root of the cladogram refers to Bacteria. Only taxonomic levels L2 (phylum) to L4 (order) are labeled. See Table S5 for taxonomic level L5 (family) and L6 (genera). (B) Detailed composition of bacteria belonging to Bacilli and Clostridia classes shown in A (root of the cladogram refers to the phylum Firmicutes).

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