Table 5.
The exclusivity ratio (%) of row with respect to column for the 10 cells from Anaerolinea, Smithella, and Syntrophus single-cell data sets coassembled using 10 colors with Squeezambler (Taghavi et al., 2013), a tool in the HyDA package.
|
Anaerolinea |
Smithella |
Syntrophus |
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| A17 | F02 | F16 | K04 | K19 | MEB10 | MEK03 | MEL13 | C04 | K05 | ||
| Anaerolinea | A17 | 0 | 24 | 87 | 95 | 96 | 80 | 82 | 86 | 22 | 19 |
| F02 | 77 | 0 | 96 | 98 | 99 | 71 | 68 | 72 | 12 | 5 | |
| Smithella | F16 | 96 | 96 | 0 | 73 | 73 | 37 | 22 | 38 | 96 | 55 |
| K04 | 97 | 97 | 49 | 0 | 67 | 42 | 25 | 45 | 97 | 73 | |
| K19 | 98 | 98 | 54 | 68 | 0 | 35 | 32 | 32 | 98 | 55 | |
| MEB10 | 96 | 96 | 74 | 48 | 69 | 0 | 24 | 39 | 95 | 57 | |
| MEK03 | 97 | 97 | 73 | 54 | 74 | 38 | 0 | 37 | 96 | 58 | |
| MEL13 | 97 | 97 | 76 | 51 | 68 | 39 | 22 | 0 | 97 | 59 | |
| Syntrophus | C04 | 44 | 39 | 89 | 96 | 97 | 85 | 86 | 90 | 0 | 64 |
| K05 | 77 | 75 | 54 | 76 | 75 | 45 | 41 | 49 | 73 | 0 | |
Only the contigs of coverage at least 1 in the corresponding color are considered. Coverage cutoff was chosen to be 24 for all HyDA assemblies (ācā=ā24).