Table 5.
DAVID domain analysis of chicken proteins interacting with SNV 5’ UTR (+1–602)
| Identifier term Domain term (Protein count) |
Fold enrichment p-value |
Proteins |
|---|---|---|
| IPR012677 Nucleotide-binding, alpha-beta plait (21) |
24 2.57E-22 |
PTBP1, HNRNPA2B1, SYNCRIP, IGF2BP1, ELAVL1, RPL23A, HNRNPR, NONO, HNRNPA3, HNRPDL, HNRNPM, HNRNPH3, TARDBP, SFPQ, U2AF1, CIRBP, THOC4, PABPC1, HNRNPH1, MATR3, HNRNPAB |
| IPR000504 RNA recognition motif, RNP-1 (20) |
23 7.41E-21 |
PTBP1, HNRNPA2B1, SYNCRIP, IGF2BP1, ELAVL1, HNRNPR, NONO, HNRNPA3, HNRPDL, HNRNPM, HNRNPH3, TARDBP, SFPQ, U2AF1, CIRBP, THOC4, PABPC1, HNRNPH1, MATR3, HNRNPAB |
| IPR002017 Spectrin repeat (3) |
35 3.28E-03 |
SPTBN1, ACTN1, SPTAN1 |
| IPR012975 NOPS (2) |
161 1.22E-02 |
NONO, SFPQ |
| IPR001813 Ribosomal protein 60S (2) |
161 1.22E-02 |
RPLP0, RPLP1 |
| IPR006535 HnRNP R and Q splicing factor (2) |
97 2.02E-02 |
SYNCRIP/HNRNPQ, HNRNPR |
| IPR014837 EF-hand, Ca insensitive (2) |
81 2.42E-02 |
ACTN1, SPTAN1 |
| IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal (3) |
112 2.57E-02 |
DDX3X, DDX5, SNRNP200 |
| IPR005824 KOW (2) |
54 3.62E-02 |
RPL27, RPS4X |
| IPR002453 Beta tubulin (2) |
44 4.40E-02 |
TUBB, TUBB2C |
*
Started with terms with p value greater than 0.05, removed redundant domain categories, rounded fold enrichment and p values. Overrrepresented domains listed in order of decreasing statistical significance.