Table 1.
MIGS ID | Property | Term | Evidence codea |
---|---|---|---|
Current classification | Domain: Bacteria | TAS [43] | |
Phylum: Firmicutes | TAS [44] | ||
Class: Bacillus | TAS [45] | ||
Order: Bacillales | TAS [46] | ||
Family: Paenibacillaceae | TAS [45] | ||
Genus: Paenibacillus | TAS [37] | ||
Species: Paenibacillus antibioticophila | IDA | ||
Type strain: GD11T | IDA | ||
Gram stain | Positive | IDA | |
Cell shape | Bacilli | IDA | |
Motility | Motile | IDA | |
Sporulation | Nonsporulating | IDA | |
Temperature range | Mesophile | IDA | |
Optimum temperature | 37°C | IDA | |
MIGS-6.3 | Salinity | Unknown | |
MIGS-22 | Oxygen requirement | Aerobic | IDA |
Carbon source | Unknown | IDA | |
Energy source | Unknown | IDA | |
MIGS-6 | Habitat | Human gut | IDA |
MIGS-15 | Biotic relationship | Free-living | IDA |
MIGS-14 | Pathogenicity | Unknown | |
Biosafety level | 2 | ||
Isolation | Human faeces | ||
MIGS-4 | Geographic location | Marseille, France | IDA |
MIGS-5 | Sample collection time | March 2012 | IDA |
MIGS-4.1 | Latitude | 43.296482 | IDA |
MIGS-4.1 | Longitude | 5.36978 | IDA |
MIGS-4.3 | Depth | Surface | IDA |
MIGS-4.4 | Altitude | 0 m above sea level | IDA |
MIGS, minimum information about a genome sequence.
Evidence codes are as follows: IDA, inferred from direct assay; TAS, traceable author statement (i.e., a direct report exists in the literature); NAS, nontraceable author statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species or anecdotal evidence). These evidence codes are from the Gene Ontology project (http://www.geneontology.org/GO.evidence.shtml) [47]. If the evidence code is IDA, then the property should have been directly observed, for the purpose of this specific publication, for a live isolate by one of the authors, or by an expert or reputable institution mentioned in the acknowledgements.