Table 3. Expression profiles of genes involved in hormone biosynthesis and signal transduction pathways in apple.

Gene ID (Apple Genome Data)	TPM-2x	TPM-4x	log2 (4x/2x)	P-Value	FDR	Annotation
AUX1 MDP0000885425	15.20	4.34	−1.81	1.57E–09	1.97E–08	Auxin signal transduction
MdARF3 MDP0000179650	46.99	20.84	−1.17	1.22E–14	2.88E–13	Auxin signal transduction
DWF4 MDP0000144510	50.79	22.58	−1.17	1.22E–15	3.06E–14	BR biosynthesis
BKI1 MDP0000124873	2.76	11.29	2.03	6.15E–08	6.47E–07	BR signal transduction
BSK MDP0000092692	20.90	5.38	−1.96	7.38E–14	1.58E–12	BR signal transduction
BIN2 MDP0000295137	6.91	21.02	1.61	6.14E–11	8.85E–10	BR signal transduction
GA2ox MDP0000137705	1.21	0.01	−6.92	0.007983	0.002949	GA biosynthesis
DELLA MDP0000205622	31.79	10.94	−1.54	5.89E–15	1.42E–13	GA signal transduction
GID2 MDP0000126528	22.46	7.30	−1.62	9.63E–12	1.50E–10	GA signal transduction