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. 2016 May 23;16:92. doi: 10.1186/s12866-016-0703-x

Table 2.

Bacterial strains, plasmids and oligonucleotides used in this study

Strain or plasmid Relevant characteristics Reference
E. coli JM109 Plasmid storage and expression of lcp
E. coli XL1-blue Transformation strain Stratagene
Rhodococcus rhodochrous RPK1 Wild type strain, degrades rubber this study
 pUC9::strep-lcp K30 (SN5339) Cloning vector for lcp K30, Apr [18]
 pUC9::strep-lcp Rr (SN5759) Cloning vector for lcp Rr, Apr this study
 p4782.1 (SN3513) Mobilizable broad host range [37]
Expression vector, Kmr
 p4782.1::strep-lcp K30 (SN5496) Coding sequence of strep-lcp K30 under [18]
Rhamnose promoter control, Kmr
 p4782.1::strep-lcp Rr (SN5760) Coding sequence of strep-lcp Rr under this study
Rhamnose promoter control, Kmr
Oligonucleotides
 LcpRr-complete_for GCAGAATCCACATGTCCT
 LcpRr-complete_rev CGACAAACCCACAGATGA
 LcpRr-mature-PstI_for GGGCCTGCAGCGGCCCTGGAGGTGGTCGCC
 LcpRr-mature-HindIII_rev CCGGTAAGCTTTCAGGGATAGTTGGG
 16S-universal-for GAGTTTGATC(A/C)TGGCTCAG
 16S-universal-rev GG(C/T)TACCTTGTTACGACT
 16S-Rr-complete_for CTGGCGCGGTGCTTAAC
 16S-Rr-complete_rev CAGTAATTCCGGACAACG

Kanamycin resistance (Kmr), Ampicillin resistance (Apr)