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. 2016 May 24;11(5):e0156182. doi: 10.1371/journal.pone.0156182

Fig 5. A phylogenetic tree of 54 isolates of Rathayibacter toxicus was generated using concatenated consensus partial gene sequences six genes.

Fig 5

A total of 5,182 nucleotides from vancomycin resistant protein vanA, CRISPR-associated protein cse4, secA ATPase, chromosome partition protein SMC, tRNA dihydrouridine synthase, and cysteine desulfurase genes, were analyzed to generate this tree. Three distinct groups RT-I, RT-II and RT-II were formed. The tree was constructed using neighbor-joining and Tamura-Nei genetic distance model. A consensus tree was generated through bootstrap analysis using Geneious Tree Builder program with 1000 cycles; the obtained values labeled at the forks indicate the confidence limits for the grouping. The scale bar at the bottom indicates the substitution rate. Detail for all isolates and gene accession numbers submitted to NCBI GenBank are given in Table 1 and S1 Table.