Table 2.
Summary of raw reads per sample, quality filtering, and mapping percentages of surviving reads.
| Buffalograss samplesa | Total raw reads (millions) | Total reads after removing contaminants (millions) | Surviving reads mapped to Prestige referenceb (%) | Surviving reads mapped to final buffalograss reference (%) |
|---|---|---|---|---|
| 17C1 | 24.4 | 21.9 | 97.01 | 99.10 |
| 17C2 | 26.5 | 24.1 | 97.25 | 99.23 |
| 17C3 | 31.5 | 28.3 | 97.6 | 99.38 |
| 17T1 | 27.6 | 24.3 | 94.44 | 99.06 |
| 17T2 | 33.3 | 29.8 | 94 | 98.97 |
| 17T3 | 32.3 | 28.6 | 92.91 | 98.93 |
| 50C1 | 25.8 | 23.1 | 96.83 | 99.13 |
| 50C2 | 19.6 | 17.6 | 97.05 | 99.23 |
| 50C3 | 26.8 | 23.7 | 97.14 | 99.27 |
| 50T1 | 20.3 | 17.1 | 92.81 | 98.58 |
| 50T2 | 58.1 | 49.0 | 94.47 | 99.11 |
| 50T3 | 20.9 | 18.0 | 94.99 | 99.14 |
| 95C1 | 21.9 | 19.4 | 97.56 | 99.31 |
| 95C2 | 21.6 | 19.5 | 97.47 | 99.34 |
| 95C3 | 24.0 | 21.7 | 98.08 | 99.39 |
| 95T1 | 33.0 | 27.9 | 94.92 | 99.16 |
| 95T2 | 28.7 | 24.3 | 95.11 | 99.15 |
| 95T3 | 30.9 | 27.4 | 94.42 | 99.06 |
| PC1 | 18.7 | 16.6 | 90.71 | 99.06 |
| PC2 | 23.5 | 20.4 | 86.57 | 98.78 |
| PC3 | 24.6 | 22.0 | 92.37 | 99.07 |
| PT1 | 27.2 | 23.3 | 90.18 | 98.57 |
| PT2 | 25.0 | 20.8 | 94.8 | 99.11 |
| PT3 | 29.0 | 24.5 | 95.89 | 99.13 |
a17, 50, 95 and P refers to NE BG 7-3459-17, NE BG 7-3453-50, 95-55 and Prestige, respectively. C and T indicate untreated and treated samples. bWachholtz et al. (2013).