Table 1. Human or swine TTV- specific PCR assays used for the assessment of the human and swine sera.
PCR | PCR Type | Target | Forward Primer | Reverse Primer | Size (bp) | BLASTresults |
---|---|---|---|---|---|---|
Pan-Human TTV | qPCR | Untranslated region (Conserved) | 5′gtaagtgcacttccgaatggctgag3′ | 5′gcccgaattgcccttgac3′ | 132 | aAB041007.1 |
aAF122915.1 | ||||||
bKJ082064.1 | ||||||
bAY590626.1 | ||||||
Pan-TTSuV UTR 1 | qPCR | Untranslated region (Conserved) | 5′cgaatggctgagtttatgcc3′ | 5′gataggccccttgactccg3′ | 95 | aKR054745.1 |
a,bKR131718.1 | ||||||
bHM633251.1 | ||||||
bKR054745.1 | ||||||
TTSuV1- UTR 2 | Gel-based | Untranslated region (Conserved) | 5′gcggtcaaaatggcggaag3′ | 5′ggacttgagctcccgaccaa3′ | 124 | aEU564163.1 |
aJF451574.1 | ||||||
bEU006509.1 | ||||||
bJX872390.1 | ||||||
TTSuV1-ORF2 | Gel-based | ORF2 (Variable) | 5′agtcaagcttttgccggaacactgggaggaag3′ | 5′acgtctcgagccagccatcgtcgccgat3′ | 235 | aJX535326.1 |
aHM633254.1 | ||||||
bHM633254.1 | ||||||
bJX535326.1 | ||||||
TTSuV1-ORF3 | Gel-based | ORF3 (Variable) | 5′gcgacgatggctgtttggaggtgaaataccaaccc3′ | 5′acgtctcgaggcgtttcttttgttttttat3′ | 477 | aHM633244.1 |
aHM633254.1 | ||||||
bHM633254.1 | ||||||
bJX535326.1 |
aTop 2 nucleotide BLAST results obtained from the sequenced PCR amplicons two swine samples.
bTop 2 nucleotide BLAST hits obtained from the sequenced PCR amplicons of two human samples.