Table 2. Detailed information about Genotype/Allele of SNPs for GAS6/PROS1 Gene with Behcet Disease in the First and Replication Stage.
SNP | Stage | Genotype/Allele | Case | (freq.) | Control | (freq.) | P value | Pc value | OR(95% CI) |
---|---|---|---|---|---|---|---|---|---|
rs9577873 | 1st stage | CC | 339 | (0.823) | 443 | (0.724) | 2.57 × 10−4 | 2.42 × 10−2 | 1.772(1.301–2.413) |
CT | 69 | (0.167) | 159 | (0.26) | 4.97 × 10−4 | 4.67 × 10−2 | 0.573(0.418–0.786) | ||
TT | 4 | (0.01) | 10 | (0.016) | 0.37 | NS | 0.590(0.184–1.895) | ||
C | 747 | (0.907) | 1045 | (0.854) | 3.96 × 10−4 | 3.72 × 10−2 | 1.662(1.252–2.206) | ||
2nd stage | CC | 409 | (0.826) | 865 | (0.741) | 1.61 × 10−4 | 1.51 × 10−2 | 1.666(1.276–2.175) | |
CT | 80 | (0.162) | 283 | (0.242) | 2.71 × 10−4 | 2.55 × 10−2 | 0.603(0.458–0.793) | ||
TT | 6 | (0.012) | 20 | (0.017) | 0.452 | NS | 0.704(0.281–1.765) | ||
C | 898 | (0.907) | 2013 | (0.862) | 2.97 × 10−4 | 2.79 × 10−2 | 1.566(1.226–2.000) | ||
combined | CC | 748 | (0.825) | 1308 | (0.735) | 2.03 × 10−7 | 1.91 × 10−5 | 1.698(1.389–2.075) | |
CT | 149 | (0.164) | 442 | (0.248) | 6.59 × 10−7 | 6.19 × 10−5 | 0.595(0.484–0.731) | ||
TT | 10 | (0.011) | 30 | (0.017) | 0.238 | NS | 0.650(0.316–1.336) | ||
C | 1645 | (0.907) | 3058 | (0.859) | 5.23 × 10−7 | 4.92 × 10−5 | 1.598(1.329–1.921) | ||
rs4857037 | 1st stage | AA | 363 | (0.881) | 476 | (0.778) | 2.52 × 10−5 | 2.37 × 10−3 | 2.117(1.486–3.016) |
AG | 48 | (0.117) | 131 | (0.214) | 5.57 × 10−5 | 5.24 × 10−3 | 0.484(0.339–0.692) | ||
GG | 1 | (0.002) | 5 | (0.008) | 0.238 | NS | 0.295(0.034–2.537) | ||
A | 774 | (0.939) | 1083 | (0.885) | 3.18 × 10−5 | 2.99 × 10−3 | 2.015(1.441–2.819) | ||
2nd stage | AA | 429 | (0.867) | 912 | (0.781) | 5.10 × 10−5 | 4.80 × 10−3 | 1.825(1.360–2.448) | |
AG | 62 | (0.125) | 246 | (0.211) | 4.18 × 10−5 | 3.93 × 10−3 | 0.537(0.397–0.725) | ||
GG | 4 | (0.008) | 10 | (0.009) | 0.922 | NS | 0.943(0.294–3.022) | ||
A | 920 | (0.929) | 2070 | (0.886) | 1.59 × 10−4 | 1.49 × 10−2 | 1.689(1.283–2.222) | ||
combined | AA | 792 | (0.873) | 1388 | (0.78) | 4.81 × 10−9 | 4.52 × 10−7 | 1.945(1.552–2.437) | |
AG | 110 | (0.121) | 377 | (0.212) | 8.42 × 10−9 | 7.91 × 10−7 | 0.514(0.408–0.646) | ||
GG | 5 | (0.006) | 15 | (0.008) | 0.406 | NS | 0.652(0.236–1.800) | ||
A | 1694 | (0.934) | 3153 | (0.886) | 1.96 × 10−8 | 1.85 × 10−6 | 1.822(1.474–2.253) |
Pc value: the Bonferroni correction P value; NS: not significant.