| BGLAP | Bone Gamma Carboxyglutamate Protein |
| cDNA | Complementary Deoxyribonucleic Acid |
| CHAD | Chondroadherin |
| C-HPP | Chromosome-Centric Human Proteome Project |
| CsA | Cyclosporin A |
| DNAse | Deoxyribonuclease |
| EMD | Enamel Matrix Derivative |
| ESI | Electrospray Ionization |
| FN | Fibronectin |
| FNA | Fine Needle Aspiration |
| HGF | Hepatocyte Growth Factor |
| GCF | Gingival Crevicular Fluid |
| GVHD | Graft Versus Host Disease |
| HA | Hydroxyapatite |
| HPP | Human Proteome Project |
| LC/MS | Liquid chromatography/mass spectrometry |
| LTQ-FT | Linear Ion Trap Mass Spectrometer |
| LUM | Lumican |
| mRNA | messenger Ribonucleic Acid |
| MS | Mass-Spectrometry |
| MALDI | Matrix-Assisted Laser Desorption/Ionization |
| PDL | Periodontal Ligament |
| PEEK | Polyetheretherketone |
| R-PCR | Realtime-Polymerase Chain Reaction |
| SDS-PAGE | Sodium dodecyl sulfate polyacrylamide gel electrophoresis |
| TAILS | Terminal Amine Isotropic Labelling of Substrates |
| TNN | Tenascin |
| USWS | Unstimulated Whole-Mouth Saliva |
| VIM | Vimentin |
| VTN | Vitronectin |
| WS | Whole-Mouth saliva |
| WB | Western Blotting |
| 2-DE | 2-Dimensional Electrophoresis |