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. 2016 Apr 5;291(22):11635–11646. doi: 10.1074/jbc.M116.725317

TABLE 1.

RNA-seq analysis indicates multiple growth factor genes are up-regulated by poly(I:C) or LL-37

RNA-seq gene profiling was carried out for growth factors and select cytokines in NHEKs after a 24-h exposure to dsRNA mimic 0.1 μg/ml poly(I:C) or 1.75 μm LL-37. Represented genes were up-regulated a minimum of 2-fold or greater and had a significant p value (p < 0.05). Ligands along with their respective binding receptor(s) and calculated p values and -fold change when the treatment condition was compared with untreated control (Ctrl) NHEKs are listed.

Growth factor ligand Growth factor ligand gene Binding receptor p value -Fold change (Ctrl vs. poly(I:C))
Up-regulated by poly(I:C)
    Colony-stimulating factor 2 CSF2 CSF2R 3.01E − 02 107.26
    Interleukin 6 IL-6 IL-6R 2.75E − 02 27.51
    Inhibin, βA INHBA ACVR2A 2.08E − 30 20.99
    Colony-stimulating factor 3 CSF3 CSF3R 4.47E − 07 13.08
    Fibroblast growth factor 2 (basic) FGF2 FGFR1–4 1.57E − 11 8.65
    Heparin-binding EGF-like growth factor HBEGF ERBB1, -4 4.90E − 18 7.63
    Bone morphogenetic protein 2 BMP2 BMPR1, -2 8.74E − 06 6.82
    Colony-stimulating factor 1 CSF1 CSF1R 2.51E − 02 3.95
    Vascular endothelial growth factor C VEGFC VEGFR2, -R3 7.27E − 21 3.26
    Vascular endothelial growth factor A VEGFA VEGFR1, -R2 2.79E − 19 2.53
    Transforming growth factor α TGFα ERBB1 1.78E − 17 2.43

Up-regulated by LL-37
    Interleukin 6 IL-6 IL-6R 8.56E − 03 50.49
    Fibroblast growth factor 2 (basic) FGF2 FGFR1–4 9.20E − 30 32.66
    Growth differentiation factor 15 GDF15 ERBB2 2.02E − 06 19.16
    Inhibin, βA INHBA ACVR2A 5.37E − 18 10.46
    Heparin-binding EGF-like growth factor HBEGF ERBB1, -4 8.06E − 17 7.13
    Bone morphogenetic protein 2 BMP2 BMPR1, -2 7.10E − 04 4.52
    Vascular endothelial growth factor A VEGFA VEGFR1, -R2 5.87E − 32 3.25
    Epiregulin EREG ERBB1, -4 1.47E − 21 3.02