Table 1.
Summary of reads from raw data to cleaned sequences for small RNAs in CE-R versus CE-NR in sheep.
| Item | CE-R group library |
CE-NR group library |
||
|---|---|---|---|---|
| Total (%) | Unique (%) | Total (%) | Unique (%) | |
| Total reads | 13,587,724 (100%) | 748,307 (100%) | 14,646,574 (100%) | 571,606 (100%) |
| Exon-antisense | 6775 (0.05%) | 2962 (0.4%) | 5063 (0.03%) | 1738 (0.3%) |
| Exon-sense | 133,866.00 (0.99%) | 111,877.00 (14.95%) | 106,838.00 (0.73%) | 90,046.00 (15.75%) |
| intron_antisense | 312,754.00 (2.3%) | 19,491.00 (2.6%) | 219,448.00 (1.5%) | 13,581.00 (2.38%) |
| Intro-sense | 329,744.00 (2.43%) | 55,295 (7.39%) | 297,407.00 (2.03%) | 35,607.00 (6.23%) |
| miRNA | 8,606,510.00 (63.34%) | 4269.00 (0.57%) | 10,035,170.00 (68.52%) | 3779.00 (0.66%) |
| rRNA | 439,523.00 (3.23%) | 34,101.00 (4.56%) | 419,864.00 (2.87%) | 35,424.00 (6.20%) |
| Repeat | 130,348.00 (0.96%) | 64,087.00 (8.56%) | 70,553.00 (0.48%) | 31,278.00 (5.47%) |
| snRNA | 18,297.00 (0.13%) | 4636.00 (0.62%) | 13,307.00 (0.09%) | 3567.00 (0.62%) |
| snoRNA | 20,684.00 (0.15%) | 3995.00 (0.53%) | 12,220.00 (0.08%) | 2889.00 (0.51%) |
| tRNA | 139,213.00 (1.02%) | 17,943.00 (2.40%) | 111,653.00 (0.76%) | 14,785.00 (2.59%) |
| unann | 3,449,510.00 (25.39%) | 429,651.00 (57.42%) | 3,355,111.00 (22.91%) | 338,912.00 (59.29%) |