Table 1.
Sample | Known miRNAs | miRNA* | miRNA* > miRNA | Unique miRNAs | Difference |
---|---|---|---|---|---|
D7 | 174 | 88 | 20 | 75 | 44 |
D10 | 175 | 98 | 21 | 78 | 48 |
D12 | 171 | 94 | 16 | 75 | 45 |
D16 | 178 | 100 | 20 | 77 | 47 |
D18 | 187 | 121 | 33 | 83 | 50 |
D21 | 193 | 106 | 27 | 79 | 44 |
Total | 209 | 133 | 41 | 91 | 56 |
Consistent among six libraries | 157 | 70 | 11 | 65 | 36 |
“Known miRNAs,” conserved miRNAs between P. tomentosa and P. trichocarpa; “Total,” number of reads identified in at least one library; “Consistent among six libraries,” number of reads identified during SVS regeneration in all six small RNA libraries; “miRNA* ≥ miRNA,” the number of miRNAs* matched to an equivalent or greater number of sequences than the corresponding miRNA. “Unique miRNAs,” the number of members of a given miRNA family with identical sequences; “Difference,” the number of instances in which the unique miRNA sequence with the most reads was not the mature miRNA in miRBase 18.0.