Table 4.
The target genes of novel miRNAs as validated by degradome sequencing.
| miRNA | Target gene annotation | Target gene ID* |
|---|---|---|
| pto-miR001 | XTH9 | potri.019G125000(2) |
| Cycloartenol synthase 1 (CAS1) | potri.006G079300(2) | |
| pto-miR005 | Endo-beta-mannanase 7 (MAN7) | potri.005G120500(4), potri.007G022000(4) |
| Unknown protein | potri.008G203800(4) | |
| pto-miR009 | Unknown protein | potri.008G076300(4), potri.013G144000(4) |
| pto-miR011 | Unknown protein | potri.001G077200(4), potri.T154400(4) |
| pto-miR016 | NB-ARC domain disease resistance protein | potri.014G007900(4), potri.004G169800(4), potri.004G170200(4), potri.004G170700(4), potri.014G002200(4), potri.014G002300(4), potri.014G009300(4), potri.014G009600(4), potri.014G010900(4), potri.014G012000(4) |
| pto-miR017 | Protein phosphatase 2A-3 | potri.003G217900(4) |
| pto-miR030 | TCTP | potri.008G221200(2), potri.008G226500(2) |
| pto-miR037 | MAPR3 | potri.015G125100(2) |
| Expansin A4 | potri.001G240900(2) | |
| pto-miR040 | Galactose oxidase/kelch repeat protein | potri.001G331500(4) |
| pto-miR042 | Succinate dehydrogenase 1-1 | potri.007G026400(2) |
| pto-miR043 | NRB4 | potri.003G013300(4), potri.003G029100(4) |
| pto-miR047 | Ubiquitin-conjugating enzyme 2 | potri.015G064000(4) |
| pto-miR056 | NAC transcription factor | potri.002G181900(0), potri.002G182400(0), potri.013G079700(0), potri.014G071000(0), potri.014G108100(0) |
| pto-miR070 | BON3 | potri.013G029100(1) |
| pto-miR073 | NB-ARC domain disease resistance protein | potri.005G237900(4), potri.017G143500(4), potri.017G143600(4), potri.017G144400(4), potri.T060300(4), potri.T060600(4), potri.T060400(4) |
| SNF7 family protein | potri.018G069900(4) | |
| pto-miR080 | Chaperone DnaJ-domain superfamily protein | potri.005G181700(2) |
| pto-miR081 | Auxin response factor 2 | potri.012G106100(4) |
| pto-miR084 | Lysophosphatidyl acyltransferase 2 | potri.006G055000(4) |
| pto-miR087 | Squamosa promoter-binding protein | potri.002G188700(4) |
| pto-miR091 | Extensin 3 | potri.002G070100(3) |
| Tubby like protein 3 | potri.008G195200(2) | |
| pto-miR092 | UDP-glycosyltransferase superfamily protein | potri.001G179000(4) |
| pto-miR095 | Exocyst complex component SEC5 | potri.005G191500(4) |
| pto-miR105 | NB-ARC domain disease resistance protein | potri.019G022800(2), potri.T013600(4), potri.T015900(4), potri.T024700(2), potri.T024900(2), potri.T025500(2), potri.T025800(4), potri.T025900(4), potri.T026800(2), potri.T028100(4), potri.T029000(2), potri.T052000(2), potri.T053000(2) |
| pto-miR107 | Ubiquitin-specific protease 7 | potri.001G197400(4) |
| pto-miR143 | NB-ARC domain disease resistance protein | potri.014G001900(4) |
| pto-miR154 | Squamosa promoter binding protein | potri.001G058600(3), potri.003G169400(2), potri.010G154300(0), potri.011G055900(1), potri.018G149900(2) |
| Casein kinase I-like 6 | potri.005G226900(2) | |
| pto-miR163 | Cellulose synthase 3 (CESA3) | potri.016G054900(4) |
| pto-miR168 | Copper/zinc superoxide dismutase 1 | potri.005G044400(4) |
| pto-miR177 | Auxin influx transporter | potri.016G113600(2) |
| pto-miR183 | Kinase interacting (KIP1-like) family protein | potri.002G049600(4) |
| ARM repeat superfamily protein | potri.008G225500(2), potri.008G225800(2) |
*
The same as Table 2.