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. Author manuscript; available in PMC: 2016 Aug 1.
Published in final edited form as: Phys Biol. 2016 Jan 29;13(1):016002. doi: 10.1088/1478-3975/13/1/016002

TABLE I.

MG Parameters. Set A is used by Tyson et. al. to produce spiral waves in a 2D spatially-extended system [28]. Set B is used to produce wider waves for cell-populations with half the number density used for Set A. Space and time units are normalized using xScale=keDγ/k1 and tScale = 1/k1 respectively, where ke is the rate of dissociation of cAMP in the extracellular environment, Dγ is the diffusion coefficient for extracellular cAMP and k1 is the rate of phosphorylation of active free receptor. In order to increase wave-width, we increased the rate of transport of intracellular cAMP by 10% while decreasing the rate of extracellular phosphodiasterase (ke) by a factor of 2.3 such that the space-scale is unchanged (implying the diffusion coefficient (Dγ) increases by a factor of 2.3). This results in a change in the Tyson parameters s1, s2, ε′ and ε. The doubled time-scale in Set B implies that all rate parameters are actually halved in physical units. This was done to maintain a realistic wave speed in our simulation to test the effect of spatial size of the wave on LEGI response.

Parameter Set A Set B
κ 18.5 18.5
L1 10 10
L2 0.005 0.005
c 10 10
λ1 0.001 0.001
λ2 2.4 2.4
s1 950 906.8182
s2 0.05 0.1265
ε 0.019 0.0181
ε 0.01 0.023
KM 4 × 10−4 M 4 × 10−4 M
KR 1 × 10−7 M 1 × 10−7 M
RT 3 × 10−8 M 3 × 10−8 M
tScale 8.3 min 16.6 min
xScale 4.5 mm 4.5 mm