Table 2. Summary of the updates made to the annotation of P. atrosepticum 21A genome by using SigmoID.
| Regulatory protein | Binding sites found | Edited downstream loci | ||
|---|---|---|---|---|
| CDS feature changed | Gene name changed | Total edited loci | ||
| ArcA | 31 | 5 | 4 | 8 |
| AscG | 4 | 3 | 6 | 7 |
| BaeR | 3 | 1 | 1 | 1 |
| CpxR | 35 | 5 | 9 | 9 |
| CRP | 110 | 28 | 31 | 44 |
| DcuR | 10 | 1 | 3 | 3 |
| FliA | 33 | 8 | 7 | 8 |
| FNR | 92 | 23 | 24 | 29 |
| FruR | 14 | 5 | 5 | 5 |
| Fur | 85 | 45 | 36 | 50 |
| GalR | 10 | 3 | 0 | 3 |
| HrpL | 6 | 5 | 3 | 5 |
| KdgR | 43 | 10 | 8 | 13 |
| LexA | 20 | 1 | 4 | 4 |
| MetJ | 14 | 4 | 6 | 6 |
| NarP | 22 | 2 | 5 | 5 |
| NsrR | 12 | 1 | 1 | 1 |
| OxyR | 13 | 3 | 1 | 3 |
| PhoB | 10 | 0 | 2 | 2 |
| PhoP | 24 | 3 | 6 | 6 |
| PurR | 12 | 1 | 2 | 2 |
| RcsB | 24 | 4 | 6 | 6 |
| Rob | 25 | 13 | 8 | 13 |
| RpoE | 19 | 6 | 2 | 8 |
| RpoH | 9 | 0 | 3 | 3 |
| RpoN | 38 | 32 | 22 | 34 |
| RpoS | 24 | 9 | 9 | 10 |
| SlyA | 22 | 13 | 11 | 14 |
| UxuR | 5 | 0 | 4 | 4 |
| Zur | 4 | 3 | 1 | 3 |