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. 2016 May 6;113(21):5841–5846. doi: 10.1073/pnas.1520969113

Fig. 3.

Fig. 3.

Complementary shapes demonstrate the capacity of programmable interactions. (A) Each shape xi is made of L vertical bars of different heights and has a corresponding binding partner yi shaped exactly as its complement; interactions are mediated via depletant particles of diameter d, and each adjoining bar can change by a maximum amount of δ. (B) Mutual information as a function of N, the number of lock–key pairs, showing a capacity of 7.8 bits (L=10, d=0.2μm, δ=1μm, s¯=10kBT). (C) Increasing L increases the on-target binding strength |s| (blue), but has little effect on off-target binding strength |w¯| (black), unlike with colors (Fig. 2C). (C, Inset) Capacity scales linearly with L. Allowing translations has no effect on |s¯|, but increases |w¯| (black, dashed line) and therefore decreases C (red, dashed line). (d=0.07μm, δ=1μm, ϵ=1kBT). (D) Fixing s¯=10kBT, the capacity can be increased by increasing δ: When δ/d is small, on-target keys are indistinguishable from off-target keys, and so capacity is small. Increasing δ decreases the crosstalk, and capacity increases accordingly.