Table S1.
TSS positions in natural promoters in E. coli that exhibited large, ≥20%, CRE effects
| Promoter sequence (putative −10 element is underlined; TSS is capitalized; GCRE is in bold) | TSS+1NT | CRE effect (%) | Genome coordinate | Strand | Downstream gene | Distance (in bp) to start of downstream gene |
| ggagattgcccatcccgccatcctggtctaagcttggaaaGgatcaa | g | 39 | 1490753 | − | gapC | 40 |
| aagcattttcttatacccgttcagacgttattcttatttcAgatcat | g | 36 | 1986797 | + | ftnB | 128 |
| tttttacctacgcaggctatttcttcggtacaatcccgatGgttcag | g | 35 | 2434193 | − | accD | 267 |
| accctgcattgtgtcctctctttggtactaagctttacttGgagtaa | g | 35 | 3441061 | + | ||
| atgaaagattaattagtcaagattatgatatctttttaacGgataat | g | 33 | 2315698 | + | rcsB | 479 |
| tatcccgagcggtttcaaaattgtgatctataattaacaaAgtgatg | g | 33 | 4611152 | + | osmY | 244 |
| cttaaccggagggtgtaagcaaacccgctacgcttgttacAgagatt | g | 33 | 4330407 | + | proP | 95 |
| cgcacaaatcatatgaaaaatgaatgcttatactgaagacCgcgctt | g | 32 | 4439413 | + | ytfK | 174 |
| ctatctttattgccagcctggcctttggtagcgtagatccAgaactg | g | 31 | 18553 | + | nhaR | 162 |
| GgcgcaaacgtctgggtgctcggtctgttactgttcttccAgcaaat | g | 30 | 3371448 | − | nanE | 412 |
| ggatgacgcggcaaatcaggtgctctgctactgttatgaaGgtaacc | g | 28 | 671079 | − | nadD | 507 |
| tctgtgtggtgcacgccgcacgggcgtctatattcttgttGgcgtgg | g | 28 | 18122 | + | nhaR | 593 |
| aagcgcggcaggctgttgtcgaccaggctaaactggaggaGgaaatg | g | 27 | 2910110 | − | pyrG | 444 |
| tgttgaaaaaattttcccccgttttgactaaaatgcgccaGgattga | g | 27 | 850212 | + | ompX | 238 |
| aggatctccgttgctttatgagtcatgatttactaaaggcTgcaact | g | 27 | 519164 | + | ybbA | 569 |
| acactgacatcactctggcaaggatgttaggatggaccacGgatgat | g | 27 | 3990789 | − | hemC | 23 |
| cctcgacgaagctgacatttattgcggtattattgctgatGgcctgc | g | 27 | 702007 | − | nagC | 413 |
| AagaatcgcgtcgattgctggtgaatgctaataatgtattGgctcgg | g | 26 | 2522223 | − | ||
| tggtacgccgctcatcgcacaactgtttatgatctattacGgcctgc | g | 25 | 1998251 | − | yecC | 437 |
| cgccgcctggacaccgctctccgtctggtataatgatgccGgacagg | g | 25 | 633069 | − | ||
| tgttgtttaaaaattgttaacaattttgtaaaataccgacGgataga | g | 25 | 127717 | + | lpd | 195 |
| tgctggcgcagcaaatgcggctgaagtctataataaagatGgtaata | g | 25 | 2034135 | + | ||
| attgctgagacaggctctgttgagggcgtataatccgaaaAgctaat | g | 25 | 4177279 | + | secE | 79 |
| gaacctggcaaaagagaccgttgatttctatgatttgaaaGgcgatc | g | 25 | 1796090 | − | ihfA | 538 |
| ccgccaccccgtacctctgataatggtctaaaatcattgaAgccact | g | 25 | 2035631 | + | hchA | 204 |
| gcaactggtcacgctgatcgacgaagggtacactagcggaAgtcagt | g | 24 | 147583 | + | ||
| tgccctttaaaattcggggcgccgaccccatgtggtctcaAgcccaa | g | 24 | 1862617 | + | gapA | 154 |
| acatattgactaatttctgtaactgcataatctgatagacCgcgcct | g | 24 | 3354064 | + | gltB | 661 |
| ttcattcacaatactggagcaatccagtatgttcattctcTggtata | g | 24 | 4161080 | + | fabR | 44 |
| tattcttttaaaaaaaggggtaacaccgtaatctcataccGgtacgc | g | 23 | 2939320 | + | fucR | 48 |
| caacgtcaataaaatcaaaatcatcgtctattctctttgtGgtctgc | g | 22 | 3935969 | + | rbsB | 309 |
| ccgtgttgcgcaatttgtcaacgaaaacaataatgcgtaaGgtagaa | g | 21 | 2520783 | − | gltX | 111 |
| aacgtaatcacggacggtaaaatccgctacgctgtaatacAggctgt | g | 21 | 158624 | + | ||
| tttccctcgatcccaacgagcgcattggtaaactgcgtcaGgatcag | g | 21 | 856176 | + | ||
| tccttgctttaaaacgttataagcgtttaaattgcgcttcAggtgct | g | 21 | 419421 | + | brnQ | 170 |
| aaaccggatacgttccgccacagtggtgtacaatagaacaAgctatt | g | 21 | 1323765 | + | yciO | 333 |
| gcggattgacggatcatccgggtcgctataaggtaaggatGgtctta | g | 21 | 3639984 | + | uspA | 127 |
| cgctggcggcggcgcgtttaagcaggtattagtagatagcGgtgtcg | g | 20 | 4491570 | − | idnR | 431 |
| tcactttggtgatttcaccgtaactgtctatgattaatgaGgcggtg | g | 20 | 3248888 | + | yqjC | 81 |
| ccgctcgcatttttccctaagttaaatgagtaatctgatgGtgtgta | t | 34 | 1498605 | + | ydcH | 46 |
| actgcagcattctctttacctctgttgcagaatcttgatcCtgagct | t | 24 | 3307652 | − | ||
| ttggttgacattcatatgaaaaaaatcataattccatcatGtttgtg | t | 24 | 345252 | + | yahM | 152 |
| cccgatcttttttgtcactttttgtataaaatgccagggtGatggtt | a | 20 | 4074647 | + | yihW | 22 |
| aacggtaaaggcgaagtcgatgatatcgaccacctcggcaAccgtcg | c | 27 | 4182593 | + |