Table 5.
Association between genotype of our candidate risk SNPs and expression of exon-specific probesets for the same gene in the frontal cortex in UKBEC (n=134). (Only the minimal p-value for each SNP is listed).
| Gene | SNP | exprID | tID | chromosome | p-value |
|---|---|---|---|---|---|
| FKBP5 | rs9296158 | 2951640 | 2951567 | chr6 | 0.099 |
| rs3777747 | 2951601 | 2951567 | chr6 | 0.079 | |
| rs4713902 | 2951648 | 2951567 | chr6 | 0.160 | |
| rs7757037 | 2951644 | 2951567 | chr6 | 0.190 | |
| rs737054 | 2951648 | 2951567 | chr6 | 0.160 | |
| rs9380529 | 2951601 | 2951567 | chr6 | 0.060 | |
| SKA2 | rs8082544 | 3764760 | 3764738 | chr17 | 0.019 |
| rs12945875 | 3764761 | 3764738 | chr17 | 0.140 | |
| rs9911583 | 3764740 | 3764738 | chr17 | 0.006 | |
| rs8067682 | t3764738 | 3764738 | chr17 | 0.008 | |
| rs7502947 | 3764760 | 3764738 | chr17 | 0.025 | |
| NR3C1 | rs9324924 | 2879385 | 2879312 | chr5 | 0.071 |
tID:The tID is the transcript cluster ID from Affymetrix.
exprID:The exprID is the Probe Set ID from Affymetrix.