Table 2. Comparing the performance of FastEPRR when information on real haplotypes is available (${\rho }_{\text{realHap}}$), and when the inferred haplotypes are used (${\rho }_{\text{phasedHap}}$).

Real $\text{ρ}$	${\text{ρ}}_{\text{realHap}}$	${\text{ρ}}_{\text{phasedHap}}$	Real $\text{ρ}$	${\text{ρ}}_{\text{realHap}}$	${\text{ρ}}_{\text{phasedHap}}$
10	9.6 (5.0)	9.7 (5.0)	90	91.7 (22.3)	90.1 (22.3)
20	19.6 (6.8)	19.5 (6.8)	100	102.7 (24.8)	101.0 (24.9)
30	29.7 (8.5)	29.6 (8.5)	110	112.3 (25.9)	110.7 (26.6)
40	39.5 (10.6)	39.1 (10.4)	120	123.2 (27.5)	121.6 (28.8)
50	49.8 (12.6)	49.2 (12.5)	130	132.5 (28.1)	131.2 (29.7)
60	60.0 (15.0)	59.0 (14.7)	140	141.0 (28.9)	140.4 (32.0)
80	81.3 (20.2)	79.9 (20.0)	150	149.6 (30.0)	150.1 (34.1)

$n=100$ and $S=52$. The total ${10}^4$ simulated data sets are conditional on $\text{ρ}$ and $S$ as used in Figure 1. SD of $\widehat{\rho }$ given in brackets.