Table 2.

Summary statistics for host-filtered Platanus assemblies

	Patient A	Patient B	Pig unwashed	Pig washed 1	Pig washed 2	Pig washed 3	Pig washed pooled
Host filtering using Bowtie 2 alignment
Host-aligned read percentage	55.68 %	22.51 %	14.20 %	10.99 %	43.98 %	11.07 %	N/A
Scaffolds
Scaffold N50	29,787	45,917	6352	6835	22,475	36,156	4883
Largest scaffold	509386	794311	88,812	681,477	423,133	809,115	299,570
Total assembled bases	68,937,519	61,661,613	69,459,333	68,875,212	61,832,214	56,344,534	75,837,484
No of scaffolds	99,178	66,591	47,952	149,238	83,245	26,086	212,580
Scaffolds (≥500 bp)
Major scaffold N50	43,122	62,417	7574	17,034	30,929	40,825	-
Largest scaffold	509,386	794,311	88,812	681,477	423,133	809,115	-
Total assembled bases	56,795,385	53,697,990	62,853,857	47,516,449	52,301,800	53,472,496	-
No of scaffolds	4276	3157	17236	7586	5102	4269	-