Table 3. Top-5 down- and top-5 over-expressed genes in patients who achieved CR, as compared to patients who achieved PR/SD.
| Gene | Affy ID | FC | p | Description | Cytoband |
|---|---|---|---|---|---|
| CCND1 | 208712_at | −2.217 | 0.0189 | G1/S-specific cyclin-D1 | 11q13 |
| DKK1 | 204602_at | −1.868 | 0.0345 | Dickkopf-related protein 1 | 10q11.2 |
| JAK1 | 1552611_a_at | −1.245 | 0.0291 | Janus kinase 1 | 1p32.3-p31.3 |
| RUNX3 | 204198_s_at | −0.958 | 0.0399 | runt-related transcription factor 3 | 1p36 |
| TGFB1 | 203085_s_at | −0.903 | 0.000495 | transforming growth factor beta 1 | 19q13.1 |
| IKZF1 | 205039_s_at | −0.802 | 0.0105 | IKAROS family zinc finger 1 (ikaros) | 7p13-p11.1 |
| CCND2 | 200953_s_at | 3.307 | 0.000612 | G1/S-specific cyclin-D2 | 12p13 |
| ITGB1 | 1553678_a_at | 1.117 | 0.0301 | integrin beta-1 | 10p11.2 |
| ENTPD1 | 207691_x_at | 1.068 | 0.0409 | CD39 antigen | 10q24 |
| CAV1 | 212097_at | 0.867 | 0.0219 | caveolin-1 | 7q31.1 |
| HELLS | 223556_at | 0.841 | 0.0138 | proliferation-associated SNF2-like protein | 10q24.2 |
| YES1 | 202932_at | 0.805 | 0.0354 | Yamaguchi sarcoma viral oncogene homolog 1 | 18p11.31-p11.21 |