Table 2.
List of selected miRNAs associated with target genes that are transcription factors and disease resistance proteins
| miR ID | C1D (TPM) | A1D (TPM) | Target genes (No.) | Expressed transcript & the number | |||
|---|---|---|---|---|---|---|---|
| Sum | up-regulated | down-regulated | unchanged | ||||
| miR6024-3p | 132.63 | 0.01 | RLK (STK) (2) | 2 | 2 | 0 | 0 |
| NAC (1) | — | ||||||
| NBS-LRR (27) | 27 | 11 | 1 | 15 | |||
| miR482a | 33.5 | 41.77 | aNBS-LRR (1) | — | |||
| sly-miR482a | 3.58 | 7.43 | aNBS-LRR (2) | 2 | 1 | 0 | 1 |
| sly-miR482c | 3.58 | 7.43 | aNBS-LRR (6) | 4 | 2 | 1 | 1 |
| miR6026-3p | 12.82 | 18.13 | aNBS-LRR (1) | — | |||
| miR5083 | 2.15 | 2.76 | NBS-LRR (1) | — | |||
| novel_miR_674 | 3.47 | 0.01 | NBS-LRR (6) | 6 | 2 | 1 | 3 |
| novel_miR_191 | 22.11 | 61.36 | MYB (2) | 2 | 0 | 1 | 1 |
| sly-miR159 | 69.64 | 54.49 | MYB (5) | 10 | 7 | 3 | 0 |
| miR5658 | 21.23 | 16.55 | MYB (3) | 4 | 2 | 1 | 1 |
| RLK (STK) (1) | — | ||||||
| bZIP (1) | 3 | 2 | 0 | 1 | |||
| Jasmonate ZIM-domain (1) | — | — | — | — | |||
| ERF (2) | — | ||||||
| miR172a | 2508.94 | 1796.79 | AP2/ERFBP (8) | 15 | 5 | 2 | 8 |
| miR7997a | 58.09 | 0.01 | bZIP (1) | 3 | 2 | 0 | 1 |
| miR7997c | 0.01 | 39.58 | |||||
| miR5813 | 185.65 | 107.58 | STK (1) | 3 | 2 | 0 | 1 |
| miR319b | 0.01 | 2.14 | RLK (STK) (1) | — | |||
| miR4376a-3p | 48.85 | 10.3 | MAP kinase (STK) (1) | 1 | 1 | 0 | 0 |
| novel_miR_418 | 3.36 | 17.73 | RLK (STK) (1) | 2 | 1 | 0 | 1 |
| novel_miR_392 | 0.01 | 13.57 | type I MADS-box (1) | — | |||
a These NBS-LRR genes are included in the 27 NBS-LRRs targeted by miR6024-3p
RLK receptor-like kinase, STK serine/threonine-protein kinase, NAC no apical meristem/ATAF/CUP-shaped cotyledons, NBS-LRR nucleotide binding site and leucine-rich repeat, MYB Myb proto-oncogene protein, bZIP basic leucine zipper, ERF ethylene-responsive transcription factor, AP2/EREBP apetala 2/ethylene-responsive element-binding factor, MAP mitogen-activated protein