Table 1.
SNPs and corresponding genes associated with the proportion of aphids making long probes (>25min, −log 10(P) value>4)
Only the highest scoring SNP is shown per gene. Genes were grouped in one linkage disequilibrium (LD) region, if they were located within 20kb from each other. Chr.: chromosome.
| LD region | Chr. | Position | −log10(P) | AGI code | Description |
|---|---|---|---|---|---|
| 1 | 1 | 28995670 | 6.6 | At1g77160 | Protein of unknown function (DUF506) |
| 2 | 2 | 10866313 | 4.3 | At2g25530 | AFG1-like ATPase family protein |
| 3 | 3 | 20709836 | 4.2 | At3g55800 | Chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase) |
| 4 | 4 | 519513 | 4.1 | At4g01240 | S-Adenosyl-l-methionine-dependent methyltransferase superfamily protein |
| 4 | 4 | 536493 | 4.1 | At4g01280 | Homeodomain-like superfamily protein, SANT DNA-binding MYB-like domain |
| 4 | 4 | 543516 | 4.7 | At4g01290 | Unknown protein |
| 5 | 4 | 6641192 | 4.5 | At4g10790 | UBX domain-containing protein |
| 5 | 4 | 6644022 | 4.9 | At4g10800 | BTB/POZ domain-containing protein |
| 6 | 5 | 15927540 | 4.9 | At5g39770 | Pseudogene homologous to AtMSU81, restriction Endonuclease |
| 7 | 5 | 19854700 | 4.1 | At5g48965 | Mutator-like transposase family |
| 7 | 5 | 19858466 | 4.1 | At5g48970 | Mitochondrial substrate carrier family protein |