Table 1.
Methylation-specific polymerase chain reaction (PCR) (MSP) primers used in the present study
Genes | Primer sequence (5′–3′) | Products size |
---|---|---|
CHFR Flank Up | AAAAATAAGGAAAAGATGTAGAYG | 167 |
CHFR Flank Down | TAAAAATTTCCRATTAAAAAAACCC | |
CHFR Me-Sense | AGATGTAGACGTTTTTTTTTGGAGGC | 100 |
CHFR Me-Anti-Sense | ATTTCCGATTAAAAAAACCCCTTAACG | |
CHFR Un-Sense | AGATGTAGATGTTTTTTTTTGGAGGT | 115 |
CHFR Un-Anti-Sense | AAATTTCCAATTAAAAAAACCCCTTAACA | |
MGMT Flank Up | GYGTTTYGGATATGTTGGGATAGTT | 135 |
MGMT Flank Down | AAACTCCRCACTCTTCCRAAAAC | |
MGMT Me-Sense | TTTCGACGTTCGTAGGTTTTCGC | 81 |
MGMT Me-Anti-Sense | GCACTCTTCCGAAAACGAAACG | |
MGMT Un-Sense | TTTGTGTTTTGATGTTTGTAGGTTTTTGT | 93 |
MGMT Un-Anti-Sense | AACTCCACACTCTTCCAAAAACAAAACA | |
FANCF Flank Up | GGTTTTAAGTATTATTTAYGTTAGTATTT | 165 |
FANCF Flank Down | CCTCTTACCTCCACTAATTATACAAC | |
FANCF Me-Sense | AGTATTTGGGATTTCGTTATCGTGC | 99 |
FANCF Me-Anti-Sense | GAATAAAACCATACCGACCAAAACG | |
FANCF Un-Sense | TATGTTAGTATTTGGGATTTTGTTATTGTGT | 106 |
FANCF Un-Anti-Sense | ACAAATAAAACCATACCAACCAAAACA | |
MLH1 Flank Up | GGAGTGAAGGAGGTTAYGGGTAAGT | 182 |
MLH1 Flank Down | AAAAACRATAAAACCCTATACCTAATCTATC | |
MLH1 Me-Sense | ACGTAGACGTTTTATTAGGGTCGC | 115 |
MLH1 Me-Anti-Sense | CCTCATCGTAACTACCCGCG | |
MLH1 Un-Sense | TTTTGATGTAGATGTTTTATTAGGGTTGT | 124 |
MLH1 Un-Anti-Sense | ACCACCTCATCATAACTACCCACA | |
RASSf1 Flank Up | GTTTAGTTTGGATTTTGGGGGAG | 144 |
RASSf1 Flank Down | CCCRCAACTCAATAAACTCAAACTC | |
RASSf1 Me-Sense | GGGTTCGTTTTGTGGTTTCGTTC | 76 |
RASSf1 Me-Anti-Sense | TAACCCGATTAAACCCGTACTTCG | |
RASSf1 Un-Sense | GGGGTTTGTTTTGTGGTTTTGTTT | 81 |
RASSf1 Un-Anti-Sense | AACATAACCCAATTAAACCCATACTTCA |