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. 2016 Jun 6;11(6):e0156391. doi: 10.1371/journal.pone.0156391

Table 1. Chromosome, position, p-value, proportion of phenotypic variation explained (R2) and minor allele frequency of the two most significant SNPs for seven races of anthracnose resistance measured on 226 Andean bean genotypes.

Anthracnose Race SNPa Chromosome SNP Position (Mb) P-valueb R2c Minor Allele Frequency
7 ss715642306 Pv04 0.447165 6.37E-06 0.13 0.31
7 ss715649436 Pv04 0.487599 6.83E-06 0.12 0.31
39 ss715648452 Pv02 48.617342 4.60E-09 0.19 0.36
39 ss715648451 Pv02 48.606517 4.60E-09 0.19 0.36
55 ss715648451 Pv02 48.606517 3.26E-11 0.24 0.36
55 ss715648452 Pv02 48.617342 3.27E-11 0.24 0.36
65 ss715645251 Pv01 50.301532 4.04E-07 0.39 0.18
65 ss715646578 Pv01 48.340819 1.63E-06 0.14 0.37
73 ss715645251 Pv01 50.301532 3.44E-08 0.40 0.17
73 ss715645258 Pv01 50.155927 6.63E-07 0.16 0.28
109 ss715649432 Pv04 0.532194 3.88E-09 0.20 0.33
109 ss715640025 Pv04 0.212804 2.54E-05 0.12 0.33
3481 ss715645251 Pv01 50.301532 4.87E-10 0.47 0.19
3481 ss715646578 Pv01 48.340819 2.52E-05 0.10 0.36

aSNP = Single Nucleotide Polymorphic code

bP = significance level and E = exponential

cR2 = phenotypic variation explained by the SNP