Table 1. Chromosome, position, p-value, proportion of phenotypic variation explained (R2) and minor allele frequency of the two most significant SNPs for seven races of anthracnose resistance measured on 226 Andean bean genotypes.
Anthracnose Race | SNPa | Chromosome | SNP Position (Mb) | P-valueb | R2c | Minor Allele Frequency |
---|---|---|---|---|---|---|
7 | ss715642306 | Pv04 | 0.447165 | 6.37E-06 | 0.13 | 0.31 |
7 | ss715649436 | Pv04 | 0.487599 | 6.83E-06 | 0.12 | 0.31 |
39 | ss715648452 | Pv02 | 48.617342 | 4.60E-09 | 0.19 | 0.36 |
39 | ss715648451 | Pv02 | 48.606517 | 4.60E-09 | 0.19 | 0.36 |
55 | ss715648451 | Pv02 | 48.606517 | 3.26E-11 | 0.24 | 0.36 |
55 | ss715648452 | Pv02 | 48.617342 | 3.27E-11 | 0.24 | 0.36 |
65 | ss715645251 | Pv01 | 50.301532 | 4.04E-07 | 0.39 | 0.18 |
65 | ss715646578 | Pv01 | 48.340819 | 1.63E-06 | 0.14 | 0.37 |
73 | ss715645251 | Pv01 | 50.301532 | 3.44E-08 | 0.40 | 0.17 |
73 | ss715645258 | Pv01 | 50.155927 | 6.63E-07 | 0.16 | 0.28 |
109 | ss715649432 | Pv04 | 0.532194 | 3.88E-09 | 0.20 | 0.33 |
109 | ss715640025 | Pv04 | 0.212804 | 2.54E-05 | 0.12 | 0.33 |
3481 | ss715645251 | Pv01 | 50.301532 | 4.87E-10 | 0.47 | 0.19 |
3481 | ss715646578 | Pv01 | 48.340819 | 2.52E-05 | 0.10 | 0.36 |
aSNP = Single Nucleotide Polymorphic code
bP = significance level and E = exponential
cR2 = phenotypic variation explained by the SNP