Table 2.
Top SNPs from the GWAS analysis and the nearest genes.
| SNP Position | −log10 P-value | Nearest gene | Araport11 annotated function | |
|---|---|---|---|---|
| Chr1 | 5144264 | 6.51 | At1g14910 | ENTH/ANTH/VHS superfamily protein |
| Chr1 | 5144469 | 6.47 | ||
| Chr1 | 5144653 | 6.47 | ||
| Chr1 | 27655299 | 8.37 | At1g73580 | Calcium-dependent lipid-binding (CaLB domain) |
| Chr2 | 1859413 | 6.70 | At2g05160 | CCCH-type zinc finger family protein |
| Chr2 | 8973773 | 6.04 | At2g20840 | Secretory carrier membrane protein (SCAMP3) |
| Chr2 | 9750472 | 7.36 | At2g22910 | N-acetyl-l-glutamate synthase 1 (NAGS1) |
| Chr2 | 9751265 | 7.36 | ||
| Chr2 | 9751714 | 7.36 | ||
| Chr2 | 9752535 | 6.77 | ||
| Chr2 | 10799538 | 6.94 | At2g25350 | Phox (PX) domain-containing protein |
| Chr3 | 5368453 | 6.10 | At3g15880 | WUS-interacting protein 2 (WSIP2) |
| Chr3 | 18794378 | 6.52 | At3g50620 | P-loop containing nucleoside triphosphate hydrolase |
| Chr4 | 1195946 | 5.99 | At4g02710 | Kinase interacting (KIP1-like) protein (NET1C) |
| Chr4 | 1223971 | 6.03 | At4g02760 | RNI-like superfamily protein |
| Chr5 | 2143203 | 6.4 | At5g06920 | FASCICLIN-like arabinogalactan protein 21 (FLA21) |
| Chr5 | 2143640 | 6.18 | ||
| Chr5 | 2143874 | 6.11 | ||
| Chr5 | 2145769 | 6.08 | At5g06930 | nucleolar-like protein |
| Chr5 | 18632173 | 6.14 | At5g45950 | GDSL-like Lipase/Acylhydrolase superfamily protein |
| Chr5 | 19410479 | 6.22 | At5g47940 | 40S ribosomal protein S27 |