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. 2016 Jun 7;6:27496. doi: 10.1038/srep27496

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Copyright © 2016, Macmillan Publishers Limited

This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/

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The Δ (SNP-index) plot with statistical confidence intervals under the null hypothesis of no QTL (green, P < 0.01; red, P < 0.05). The X-axis represents the position of seven chromosomes, and the Y-axis represents the SNP-index. The SNP-index was calculated based on a 1 Mb interval with a 10 kb sliding window. a: using CC3 genome sequence as the reference genome; b: using NC76 genome sequence as the reference genome.