Table 2.
Haplotype effects significantly associated to early growth-related traits, from association analyses in two panels of maize
| SNP | Trait | Panel | Haplotype | Haplotype | Haplotipe | Additive effects |
|---|---|---|---|---|---|---|
| Frecuency | Mean | Average | ||||
| PUT-163a-78121249-4393 | Days to emergence | Flint | G,C,C,A | 15 | 11.80 ± 0.23 | 1.28 |
| T,T,A,G | 80 | 11.66 ± 0.09 | 0.16 | |||
| PZE-101159230 | Chlorophyll content (SPAD) | Dent | G,T,C,C | 51 | 4.54 ± 0.17 | −1.26 |
| A,T,T,C | 20 | 5.06 ± 0.27 | −0.90 | |||
| G,T,C,T | 18 | 4.25 ± 0.24 | −1.38 | |||
| G,C,C,C | 11 | 4.06 ± 0.36 | −1.98 | |||
| SYN2344 | Chlorophyll content (SPAD) | Dent | G | 44 | 4.76 ± 0.17 | −3.04 |
| A | 54 | 4.19 ± 0.14 | −3.42 | |||
| PZE-101084685 | ΦPSII | Flint | CCA | 46 | 442 ± 10 | 238 |
| CTG | 33 | 450 ± 13 | 228 | |||
| ATG | 13 | 322 ± 29 | 189 | |||
| SYN24026 | ΦPSII | Flint | C,A,G,G | 49 | 465 ± 10 | 55 |
| C,A,G,A | 27 | 418 ± 12 | 59 | |||
| C,G,T,G | 15 | 333 ± 21 | −2 | |||
| PZE-101106625 | Early vigor | Dent | T,C,G,G,G,C,C,A | 39 | 3.99 ± 0.07 | 1.10 |
| C,C,T,A,A,T,C,G | 16 | 4.04 ± 0.10 | 1.02 | |||
| T,C,G,G,A,C,T,A, | 22 | 4.03 ± 0.47 | 1.10 | |||
| PZE-105041198 | Early vigor | Flint | T | 73 | 3.95 ± 0.04 | −1.19 |
| C | 26 | 3.53 ± 0.07 | −1.61 | |||
| PZE-105041551 | Early vigor | Flint | C | 51 | 3.61 ± 0.05 | 0 |
| T | 38 | 4.07 ± 0.05 | 0.42 | |||
| PZE-107098206 | Early vigor | Flint | CT | 51 | 3.62 ± 0.05 | −0.19 |
| TT | 42 | 4.03 ± 0.05 | 0.02 |
The most favorable allele for each SNPs is underlined. haplotypes are considered when the frequency is greater than 10 %