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. 2016 Jun 7;47:61. doi: 10.1186/s13567-016-0347-8

Table 1.

List of primers used in this study

Gene Primer seta Amplicon size (bp) Gene Bank accession number
ACTB F: TGAGCGCAAGTACTCCGTAT
R: TCCTGCTTGCTGATCCACAT
96 NM_001081838.1
GAPDH F: GGTGAAGGTCGGAGTAAACGb
R: AATGAAGGGGTCATTGATGG
106 NM_001163856.1
IFNα F: TCTTGATGCTCCTGGGACAA
R: AACTGGTTGCCGTCAAACAC
103 NM_001099441.1
IFNβ F: ACCATTCTGCGCCTGAAGAA
R: AGGCCAAGTTCCTGAGCATT
115 NM_001099440.1
IFNγ F: TTAACAGCAGCACCAGCAAG
R: TTTGCGCTGGACCTTCAGAT
80 NM_001081949.1
TNFα F: AAGCCTGTAGCCCATGTTGT
R: TCTGTCAGCTTCACGCCATT
104 NM_001081819.1
IL1α F: ATGAGGATCGTCAACCACCA
R: TTCACTGCGTCGTCCAGATT
119 NM_001082500.1
IL1β F: TCAAAGTCAGCCTGGTGGAA
R: TTGCTCATCAGAAGCTGGGT
80 NM_001082526.1
IL6 F: TCTTCACAAGCACCGTCACT
R: AGTGGTCCATTTGAGGTGGT
118 NM_001082496.1
IL8 F: TCAAGACGCACTCCAAACCT
R: AGCTCCGTTGACGAGCTTTA
113 NM_001083951.1
IL12 F: ATCGTGGTGGATGCTGTTCA
R: TAATGGCTTCAGCTGCAGGT
111 NM_001082516.1
IL22 F: TTCCAGCCTTACATGCAGGA
R: TGCTGGTCATCACCCTCAAT
89 XM_001491754.3
PTX3 F: TCTGTGCAGCACCTGGAATT
R: ACAACATGACCTGTGGCCAT
99 XM_005602088.1
CXCL10 F: GCACGCTGTACCTGCATTAA
R: TGGCAATGATCTCAACACGT
112 NM_001114940.1
TLR1 F: TGTGGTGCCTTTAACAGCCT
R: TTCTGGCAGCTCTGGAAGAA
89 NM_001256899.1
TLR2 F: TGCGAATCCTGAAAGTGGGA
R: ACCGCTGGAGATTTGTAGCA
111 NM_001081796.1
TLR3 F: CCTGCAACAAGTGTGCTGTT
R: TGGGTGAGATTCAACACCGT
109 NM_001081798.1
TLR4 F: AGCACTTCATTCAGAGCCGA
R: TGAAGATGATGCCAGCACGA
90 NM_001099769.1
TLR5 F: TCCATGGAGGGTTGTGATGAc
R: CCCCGGAACTTTGTGACAAT
TLR6 F: CTGGCAAGAGCATTGTGGAA
R: ATGGCACCACTCACTCTGAA
101 NM_001257142.1
TLR7 F: TTGAGTGGCCAAGAAACCCA
R: ACCGTCTCTTTGAACACCTGA
109 NM_001081771.2
TLR8 F: TGGGCAAGTACGTGACAGAA
R: GTGCCTTGCCATTGTGGTTT
120 NM_001111301.1
TLR9 F: AGCATCTTCGCACAAGACCT
R: AGGTGGTGCAACATAGGCAT
116 NM_001081790.1
TLR10 F: TCAAACTCTCCTGCAGCCAA
R: AGTTGTTTGACCGCCGAGAT
64 XM_005608830.1
MyD88 F: TGTGTTCCACTTGCCTCTCA
R: ACGCAGGACATGAGATGTGA
97 XM_001488549.4
TRAF3 F: ACGACCAGATGCTGAGTGTT
R: CCAAATCAGCACGCCATTGT
98 XM_001490000.3
STST1 F: TGCCTTGATCAGCTGCAGAA
R: TGCTCCAGTTCCTCAAGCTT
92 XM_005601647.1
STST2 F: TGGAAAGTCCAGCAGCAGAA
R: TGCTCCAGCTGTGAACCAAT
87 XM_001504841.2
IRF3 F: AAGGTTGTTCCCACATGCCT
R: GTGGCTGTTGGAAATGTGCA
102 XM_005596407.1
IRF7 F: TGTTGTCACACTCATCGCCA
R: ACGTGTGGATTGAGGGCTTA
80 XM_005598388.1
NFkB F: ACCAGTGTCATCGAGCAGAT
R: TGCAGGTGGTTGGTGAGATT
80 XM_001916418.3
ISG15 F: CAGTTCTGGCTGACTTTCGA
R: CAGGCGCAAGTTCATGTACA
102 XM_005607605.1
SOCS1 F: ATTTAACTGTGTCTGGCGCC
R: CAACCCCTGGTTTGTGCAAA
81 XM_005615004.1
SOCS3 F: TCTCCAACATCTCTGTCGGA
R: TTAAAGCGGGGCATCGTACT
115 NM_001123379.1
Caspase 3 F: ATGCAGCAAACCTCAGGGAA
R: ATGCCACAATTTCTTCGCCG
87 NM_001163961.1
HMOX1 F: TGGCTTCTTCCTTTGGGCAT
R: TGCTTGTTGGTTGGGGAAGA
108 XM_005606579.1
WNVNSW2011 F: AACCCCAGTGGAGAAGTGGAd
R: TCAGGCTGCCACACCAAA
70 D00246

aAnnealing temperature was 60 °C for all the primer sets.

bPrimer set is adopted from Beckman et al. [54].

cKwon S et al. [55].

dPyke et al. [35].