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. 2016 Apr 5;67(12):3683–3697. doi: 10.1093/jxb/erw127

Table 8.

Significant DArT markers associated with root traits of narrow-leafed lupin.

Trait Marker Lineage groups Distance,
cM 		Site F P-value Error
DF 		Marker
R 2 		Genetic
variance 		Residual
variance 		−2Ln
likelihood
BD lPb−333104 97/226 11.6 0.001 97 0.125 606 2101 1155
BD lPb−333527 NLL−01 96.2 29 7.5 0.007 106 0.070 606 2101 1155
BD_sub lPb−333104 97/226 7.1 0.009 97 0.080 393 1535 1120
BD_top lPb−329031 42 7.0 0.010 94 0.068 1557 4090 1261
BD_top lPb−333104 97/226 18.0 0.000 97 0.194 1557 4090 1261
BD_top lPb−333527 NLL−01 96.2 29 7.5 0.007 106 0.069 1557 4090 1261
BI lPb−333615 117/246 10.8 0.001 96 0.128 0 63 759
BL_sub lPb−332834 89/218 10.3 0.002 106 0.096 7482 4694 1318
BL_sub lPb−333104 97/226 7.1 0.009 97 0.069 7482 4694 1318
BLR 801605349012_H_24 178/307 6.9 0.010 106 0.064 0.9 1.9 427
BLR lPb−329428 52 9.1 0.003 95 0.087 0.9 1.9 427
BN lPb−329031 42 7.2 0.009 94 0.068 504 1010 1115
BN lPb−333104 97/216 15.5 0.000 97 0.153 504 1010 1115
BN_2nd 801605349014_O_17 186/315 9.1 0.003 89 0.096 24 268 898
BN_2nd lPb−333741 124/253 7.1 0.009 95 0.078 24 268 898
BN_2nd lPb−334500 NLL−16 38.5 2 8.1 0.006 101 0.079 24 268 898
BN_sub 801605349003_F_3 171/300 7.4 0.008 88 0.076 278 528 1040
BN_sub lPb−333104 97/226 11.4 0.001 97 0.111 278 528 1040
BN_top lPb−329031 42 7.0 0.010 94 0.068 62 164 907
BN_top lPb−333104 97/226 18.2 0.000 97 0.194 62 164 907
BN_top lPb−333527 NLL−01 96.2 29 7.5 0.007 106 0.069 62 164 907
BNR lPb−328947 40 7.6 0.007 107 0.070 0.5 0.7 283
BNR lPb−329087 43 13.4 0.000 99 0.132 0.5 0.7 283
BNR lPb−329141 45 11.1 0.001 93 0.116 0.5 0.7 283
BNR lPb−332488 86/215 11.5 0.001 102 0.106 0.5 0.7 283
DCL_medium lPb−334226 143/272 7.6 0.007 97 0.079 1267 5118 1268
DCL_thick lPb−329803 57 7.9 0.006 94 0.082 1724 3850 1246
DCL_thin lPb−333104 97/226 7.2 0.008 97 0.080 5615 17898 1392
DCL_thin lPb−333527 NLL−01 96.2 29 7.9 0.006 106 0.074 5615 17898 1392
DCL_thin lPb−334226 143/272 8.7 0.004 97 0.084 5615 17898 1392
LBL 801605349007_M_5 175/304 8.1 0.005 96 0.083 247 261 914.1
RD lPb−330348 66/195 7.9 0.006 99 0.079 0 0 −123
RD lPb−333127 21 10.7 0.002 89 0.126 0 0 −123
RD lPb−333527 NLL−01 96.2 29 11.7 0.001 106 0.110 0 0 −123
RD lPb−334753 165/294 8.9 0.004 95 0.089 0 0 −123
RGR lPb−331019 70/199 7.6 0.007 96 0.079 0.1 0.1 94
RGR lPb−334270 145/274 7.0 0.010 97 0.074 0.1 0.1 94
RGR lPb−334297 147/276 9.8 0.002 94 0.099 0.1 0.1 94
RGR_2−4wk lPb−329428 52 8.7 0.004 95 0.098 0.1 0.2 184
RGR_2wk lPb−333220 103/232 8.5 0.004 106 0.080 0.1 0.2 148
RGR_2wk lPb−333816 129/258 7.7 0.006 105 0.072 0.1 0.2 148
RGR_2wk lPb−333836 NLL−07 29.1 14 7.5 0.008 83 0.097 0.1 0.2 148
RGR_4−6wk lPb−329031 42 7.0 0.010 94 0.074 0.3 0.6 294
RGR_4−6wk lPb−334226 143/272 8.9 0.004 97 0.095 0.3 0.6 294
RGR_4wk lPb−333228 102/231 7.2 0.009 96 0.075 0.0 0.1 93
RL_sub lPb−332834 89/218 10.6 0.002 106 0.098 7994 5529 1332
RM lPb−329803 57 7.9 0.006 94 0.080 5947 17706 1409
RMR lPb−334461 151/280 9.3 0.003 98 0.091 0 0 −96
RMR lPb−334753 165/294 12.8 0.001 95 0.130 0 0 −96
RTD lPb−329917 61 3.0 0.005 111 0.218 290 1030 1086
RTD lPb−333220 103/232 12.5 0.001 106 0.113 290 1030 1086
RTD lPb−333816 129/258 12.1 0.001 105 0.110 290 1030 1086
RV lPb−334500 NLL−16 38.5 2 8.2 0.005 106 0.075 1.4 3.7 484
SRL lPb−330348 66/195 8.5 0.004 99 0.084 51 19.2 754
SRL lPb−334461 151/280 7.9 0.006 98 0.088 51 19.2 754
TRL lPb−333816 129/258 7.4 0.008 105 0.074 72 153 909
TRL lPb−334297 147/276 8.1 0.005 94 0.081 72 153 909
TRL_2wk lPb−333220 103/232 8.4 0.005 106 0.078 9.6 37.9 739
TRL_2wk lPb−333816 129/258 7.7 0.007 105 0.072 9.6 37.9 739
TRL_2wk lPb−333836 NLL−07 29.1 14 7.7 0.007 83 0.096 9.6 37.9 739
TRL_4wk lPb−333228 102/231 7.1 0.009 96 0.077 26 87.4 836

Trait-marker association was performed with an MLM model incorporating population structure (Q-matrix) and kinship (Kr) in TASSEL 2.1. Marker R2 is the percentage of phenotypic variation explained by the marker. Only significant trait (α = 0.01)-trait-marker associations were included. Each trait is assigned to one of the nine PCs based on PCA with eigenvalues >1. The number of DArT markers found for each trait at α = 0.01 and 0.05 is presented.