Table 2. Differential expression of blueberry flowering pathway genes in leaf, bud, and flower tissues of ‘Legacy’.
| Orthologues of flowering pathway genes | FPKM (fragments per kilobase of transcript per million mapped reads) | Gene ID | Orthologues of flowering pathway genes | FPKM (fragments per kilobase of transcript per million mapped reads) | Gene ID | Orthologues of flowering pathway genes | FPKM (fragments per kilobase of transcript per million mapped reads) | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bud | Leaf | Flower | Bud | Leaf | Flower | Bud | Leaf | Flower | |||||
| ABF3 | 10.6 | 4.8 | 4.2 | c99616_g2 | CRY2 | 5.8 | 40.0 | 9.9 | c92902_g3 | PIE1 | 24.4 | 23.0 | 31.3 |
| AGL14 | 3.2 | 45.8 | 0.0 | c92516_g1 | EFS | 35.7 | 20.2 | 21.9 | c95473_g3 | PIE1 | 12.9 | 7.6 | 11.3 |
| AGL19 | 4.9 | 20.5 | 5.6 | c94437_g2 | EFS | 39.7 | 25.0 | 20.4 | c95823_g6 | PIE1 | 18.7 | 11.6 | 11.9 |
| AGL19 | 129.5 | 85.1 | 15.2 | c99784_g1 | EFS | 20.1 | 13.3 | 10.4 | c96115_g2 | PIE1 | 26.5 | 23.1 | 24.8 |
| AGL19 | 2.9 | 19.0 | 4.7 | c99653_g1 | ELF3 | 22.8 | 27.9 | 47.1 | c96482_g1 | PIE1 | 27.4 | 15.4 | 12.8 |
| AGL19 | 30.3 | 0.2 | 86.8 | c93803_g1 | ELF4 | 23.8 | 30.2 | 47.4 | c97601_g1 | PIE1 | 31.4 | 16.6 | 13.1 |
| AGL19 | 17.1 | 72.0 | 2.0 | c95520_g1 | ELF4 | 6.4 | 8.9 | 4.9 | c98765_g4 | PIE1 | 23.0 | 16.5 | 20.0 |
| AGL19 | 5.1 | 25.2 | 3.8 | c91390_g4 | ELF5 | 56.8 | 94.4 | 44.2 | c99276_g1 | PIE1 | 36.5 | 17.1 | 7.5 |
| AP1 | 7.4 | 0.0 | 14.4 | c97312_g2 | ELF6 | 22.0 | 14.4 | 10.9 | c99993_g3 | PIE1 | 24.6 | 11.5 | 12.9 |
| AP1 | 91.4 | 0.5 | 15.6 | c98947_g5 | ELF6 | 50.5 | 21.1 | 22.0 | c98035_g1 | PRR 7 | 87.0 | 26.6 | 28.8 |
| AP2 | 12.7 | 5.1 | 3.2 | c99119_g2 | ELF6 | 28.6 | 17.4 | 14.1 | c91063_g2 | PRR5 | 2.0 | 0.3 | 1.3 |
| AP2 | 56.4 | 32.8 | 40.3 | c97265_g1 | FCA | 15.8 | 19.8 | 8.1 | c92222_g2 | PRR5 | 47.8 | 65.2 | 27.1 |
| AREB3 | 35.9 | 18.8 | 18.6 | c66694_g1 | FD | 5.9 | 3.7 | 0.1 | c92704_g6 | PRR5 | 53.4 | 2.2 | 0.8 |
| ARP | 11.7 | 10.0 | 27.0 | c96634_g1 | FKF1 | 2.1 | 3.8 | 5.3 | c96565_g2 | PRR5 | 77.8 | 51.0 | 32.8 |
| ARP6 | 35.0 | 21.1 | 17.7 | c96634_g2 | FKF1 | 84.3 | 112.7 | 175.8 | c94181_g4 | RAV1 | 22.6 | 10.6 | 3.6 |
| ARP6 | 382.0 | 437.9 | 397.7 | c96828_g1 | FKF1 | 66.0 | 31.4 | 11.0 | c88293_g2 | SOC1 | 5.5 | 27.0 | 0.0 |
| ARP6 | 26.9 | 15.5 | 13.6 | c97877_g1 | FKF1 | 23.3 | 60.6 | 23.9 | c89673_g5 | SOC1 | 20.9 | 87.9 | 13.2 |
| ARP6 | 76.4 | 133.2 | 212.4 | c89277_g1 | FLD | 12.7 | 16.5 | 28.9 | c99509_g2 | SPA2 | 35.0 | 27.6 | 17.1 |
| ATCOL5 | 29.6 | 10.6 | 16.8 | c97418_g1 | FLD | 11.1 | 4.1 | 2.5 | c97089_g4 | SPA3 | 48.6 | 72.0 | 38.4 |
| CAL1 | 0.4 | 0.6 | 14.2 | c81479_g2 | FLK | 61.4 | 39.8 | 37.8 | c79187_g1 | SPL | 104.7 | 34.4 | 23.0 |
| CDF2 | 2.8 | 13.4 | 5.2 | c91122_g1 | FLK | 39.0 | 25.0 | 20.9 | c80807_g1 | SPL | 283.3 | 294.3 | 133.4 |
| CDF2 | 25.8 | 37.1 | 26.6 | c92308_g1 | FLK | 12.4 | 11.4 | 12.7 | c87494_g1 | SPL | 4.7 | 3.8 | 6.4 |
| CDF3 | 16.2 | 15.7 | 35.2 | c97816_g1 | FLK | 44.5 | 28.0 | 25.7 | c91703_g1 | SPL | 122.3 | 89.5 | 73.5 |
| CDF3 | 1.8 | 3.9 | 1.1 | c99051_g1 | FPA | 9.6 | 11.0 | 10.4 | c92156_g2 | SPL | 64.1 | 48.0 | 24.9 |
| CDF3 | 20.1 | 15.5 | 9.2 | c99819_g1 | FPA | 20.4 | 15.5 | 12.4 | c93310_g3 | SPL | 253.3 | 114.1 | 130.7 |
| CDF3 | 57.9 | 22.5 | 11.4 | c84088_g2 | FT | 34.9 | 0.2 | 0.9 | c93493_g1 | SPL | 11.8 | 11.4 | 4.2 |
| CHE | 19.3 | 13.1 | 3.4 | c75036_g1 | FUL | 93.7 | 24.6 | 66.1 | c96319_g1 | SPL | 80.6 | 16.2 | 27.3 |
| CHE | 32.5 | 39.7 | 15.7 | c77424_g2 | FUL | 4.8 | 0.0 | 54.8 | c92144_g7 | SPY | 12.9 | 6.4 | 7.7 |
| CHE | 16.8 | 12.5 | 5.1 | c79125_g1 | FUL | 120.5 | 14.7 | 38.5 | c92144_g9 | SPY | 30.6 | 18.0 | 18.4 |
| CIB1 | 0.9 | 1.2 | 5.4 | c88293_g4 | FUL | 56.7 | 29.1 | 162.4 | c90289_g1 | SVP | 12.9 | 28.7 | 0.5 |
| CIB1 | 0.4 | 0.1 | 65.3 | c90323_g1 | FUL | 7.8 | 0.0 | 1.2 | c90829_g2 | SVP | 1.6 | 35.7 | 1.7 |
| CIB1 | 8.4 | 19.8 | 5.4 | c92912_g1 | FY | 69.0 | 37.9 | 37.4 | c91377_g1 | SVP | 52.4 | 57.9 | 29.5 |
| CIB1 | 15.3 | 10.6 | 36.7 | c95783_g1 | FY | 24.4 | 13.3 | 15.2 | c95674_g3 | SWN | 22.6 | 30.4 | 30.1 |
| CIB1 | 16.0 | 14.6 | 82.9 | c99108_g3 | GI | 72.0 | 27.3 | 34.6 | c75317_g1 | TaVRN1 | 11.8 | 7.1 | 0.3 |
| CKA1 | 35.7 | 26.7 | 35.3 | c91613_g4 | GRF3 | 312.1 | 281.0 | 285.4 | c94181_g3 | TEM2 | 17.8 | 21.6 | 0.6 |
| CKA1 | 12.2 | 8.1 | 1.3 | c93155_g2 | GRF3 | 1.7 | 0.7 | 29.6 | c94930_g3 | TOC1 | 68.6 | 1.3 | 2.4 |
| CKA1 | 54.2 | 61.9 | 42.3 | c87227_g1 | HAP3B3 | 12.1 | 24.1 | 8.7 | c52913_g1 | TOE1 | 0.9 | 3.4 | 0.1 |
| CKA1 | 29.3 | 11.6 | 16.9 | c98146_g5 | HAP3B3 | 33.1 | 106.5 | 30.0 | c85378_g3 | TOE1 | 0.6 | 0.3 | 2.9 |
| CKA1 | 50.1 | 34.2 | 33.4 | c95551_g2 | HAP5C | 71.7 | 31.6 | 83.9 | c87192_g2 | TOE1 | 8.1 | 1.5 | 4.8 |
| CKA2 | 22.7 | 28.4 | 28.5 | c59813_g1 | HvFT5 | 0.1 | 1.5 | 5.8 | c87192_g5 | TOE1 | 14.1 | 7.5 | 3.2 |
| CKA2 | 113.3 | 14.6 | 14.9 | c98104_g1 | LD | 14.8 | 6.7 | 5.1 | c87982_g1 | TOE1 | 6.2 | 0.3 | 1.3 |
| CKA2 | 156.2 | 107.6 | 120.1 | c98104_g2 | LD | 15.2 | 8.4 | 7.8 | c91054_g4 | TOE1 | 1.1 | 32.6 | 0.5 |
| CKA2 | 54.0 | 31.0 | 34.9 | c96427_g2 | LFY | 44.4 | 1.8 | 0.2 | c96694_g1 | TOE1 | 12.9 | 1.1 | 1.2 |
| CKA3 | 54.4 | 33.7 | 29.0 | c90643_g1 | LHP1 | 50.7 | 30.5 | 27.9 | c96979_g5 | TOE1 | 23.5 | 3.0 | 0.4 |
| CKA3 | 4.2 | 1.2 | 38.4 | c58074_g2 | LHY | 0.6 | 3.6 | 0.0 | c98453_g2 | TOE1 | 56.1 | 16.7 | 5.8 |
| CKA3 | 15.3 | 15.5 | 9.7 | c92088_g3 | LHY | 63.8 | 62.3 | 69.6 | c91085_g1 | TOE3 | 11.1 | 3.9 | 4.0 |
| CKA3 | 74.7 | 49.3 | 47.2 | c99092_g1 | LHY | 76.6 | 223.5 | 137.8 | c96979_g6 | TOE3 | 28.6 | 13.3 | 8.3 |
| CKA3 | 59.8 | 45.3 | 94.5 | c88534_g2 | LKP2 | 19.3 | 8.4 | 13.0 | c91926_g8 | TSF3 | 8.7 | 0.7 | 0.2 |
| CKA3 | 29.6 | 14.5 | 2.5 | c96650_g1 | LUX | 10.2 | 12.7 | 8.5 | c92401_g3 | VEL1 | 1.5 | 13.4 | 4.9 |
| CKA4 | 80.5 | 78.9 | 81.1 | c95303_g7 | MAF2 | 8.7 | 7.5 | 17.7 | c92401_g6 | VEL1 | 4.3 | 17.7 | 6.6 |
| CKA4 | 6.8 | 13.2 | 9.0 | c93556_g1 | OsEhd1 | 59.0 | 28.0 | 21.8 | c98995_g1 | VRN1 | 30.7 | 10.5 | 23.7 |
| CLF | 13.8 | 9.9 | 4.4 | c97066_g3 | OsLFL1 | 11.4 | 8.2 | 6.4 | c93433_g2 | VRN5 | 7.5 | 11.0 | 11.6 |
| COP1 | 14.4 | 28.7 | 4.4 | c82061_g1 | OsSPY | 63.1 | 35.8 | 50.6 | c82411_g2 | ZmID1 | 16.0 | 24.9 | 11.8 |
| COP1 | 13.9 | 26.0 | 3.9 | c87872_g1 | PAF2 | 162.6 | 112.9 | 155.3 | c92595_g6 | ZmID1 | 109.4 | 40.8 | 33.3 |
| COP1 | 9.8 | 22.5 | 3.9 | c95421_g1 | PHYC | 6.7 | 8.8 | 9.7 | c93923_g1 | ZmID1 | 35.9 | 15.5 | 16.1 |
| CRY1 | 39.2 | 89.8 | 43.8 | c84580_g2 | PIE1 | 26.1 | 20.5 | 25.1 | c94665_g2 | ZmID1 | 16.1 | 21.8 | 4.8 |
| CRY1 | 20.1 | 38.3 | 26.0 | c89213_g2 | PIE1 | 43.9 | 24.3 | 25.1 | c96507_g4 | ZmID1 | 23.6 | 36.2 | 18.2 |
| CRY1 | 34.4 | 76.5 | 45.6 | c89266_g3 | PIE1 | 30.0 | 19.2 | 15.1 | c88070_g1 | ZTL | 22.1 | 44.2 | 58.1 |
| CRY2 | 4.2 | 13.1 | 4.7 | c92275_g1 | PIE1 | 17.5 | 8.1 | 10.6 | |||||