Table 2. PCR primers and parameters for bisulfite mutagenesis.
Locus | Gene | Primer Name | Primer Sequence (5’-3’) | Size (bp) | CpG (#) | SNPs | REF |
---|---|---|---|---|---|---|---|
15q11.2 | SNRPN | SNRPN-OF | TAGTGTTGTGGGGTTTTAGGG | 371 | 24 | Rs220029 | [27] |
(U41384) | SNRPN-IF | AGGGAGGGAGTTGGGATTT | G (84.8%) / | ||||
SNRPN-IR | CACAACAACAAACCTCTAAACATTC | A (15.2%) | |||||
SNRPN-OR | TACCCACCTCCACCCATATC | ||||||
11p15.5 | H19 | H19-OF | AATAATGAGGTGTTTTAGTTTTATGGATG | 170 | 14 | Rs2071094 | [27, 29] |
(Af087017) | H19-IF | TTGGTTGTAGTTGTGGAAT | C (66.4%) / | ||||
H19-IR | ACTCCTATAAATATCCTATTCCCAAATAACCCC | A (33.6%) | |||||
H19-OR | ACTTAAATCCCAAACCATAACACTAAAAC | ||||||
11p15.5 | KCNQ1OT1 | KCNQ1OT1-OF | TGTTTTTGTAGTTTATATGGAAGGGTTAA | 265 | 22 | Rs56134313 | [29, 30] |
(U90095) | KCNQ1OT1-IF | GTTAGGGAAGTTTTAGGGTGTGAAT | G (94.0%) / | ||||
KCNQ1OT1-IR | AAACATACCAAACCACCCACCTAACAAA | A (6.0%) | |||||
KCNQ1OT1-OR | CTCACCCCTAAAAACTTAAAACCTC |
OF = outer forward primer, IF = inner forward primer, IR = inner reverse primer, OR = outer reverse primer
94°C for 10 min, 55 cycles of (94°C for 15 sec, 56°C for 20 sec, 72°C for 20 sec), 72°C for 10 min. [27]