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. 2016 Jun 7;11(6):e0156980. doi: 10.1371/journal.pone.0156980

Table 2. PCR primers and parameters for bisulfite mutagenesis.

Locus Gene Primer Name Primer Sequence (5’-3’) Size (bp) CpG (#) SNPs REF
15q11.2 SNRPN SNRPN-OF TAGTGTTGTGGGGTTTTAGGG 371 24 Rs220029 [27]
(U41384) SNRPN-IF AGGGAGGGAGTTGGGATTT G (84.8%) /
SNRPN-IR CACAACAACAAACCTCTAAACATTC A (15.2%)
SNRPN-OR TACCCACCTCCACCCATATC
11p15.5 H19 H19-OF AATAATGAGGTGTTTTAGTTTTATGGATG 170 14 Rs2071094 [27, 29]
(Af087017) H19-IF TTGGTTGTAGTTGTGGAAT C (66.4%) /
H19-IR ACTCCTATAAATATCCTATTCCCAAATAACCCC A (33.6%)
H19-OR ACTTAAATCCCAAACCATAACACTAAAAC
11p15.5 KCNQ1OT1 KCNQ1OT1-OF TGTTTTTGTAGTTTATATGGAAGGGTTAA 265 22 Rs56134313 [29, 30]
(U90095) KCNQ1OT1-IF GTTAGGGAAGTTTTAGGGTGTGAAT G (94.0%) /
KCNQ1OT1-IR AAACATACCAAACCACCCACCTAACAAA A (6.0%)
KCNQ1OT1-OR CTCACCCCTAAAAACTTAAAACCTC

OF = outer forward primer, IF = inner forward primer, IR = inner reverse primer, OR = outer reverse primer

94°C for 10 min, 55 cycles of (94°C for 15 sec, 56°C for 20 sec, 72°C for 20 sec), 72°C for 10 min. [27]