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Parameters used for the ANIMAL algorithm for mouse brain nonlinear transformation estimation
| Step size (mm) | Iterations | Gaussian blur (mm) | Feature type |
|---|---|---|---|
| 1 | 60 | 0.25 | Intensity |
| 0.5 | 60 | 0.25 | Intensity |
| 0.5 | 60 | 0.25 | Gradient |
| 0.2 | 10 | 0.25 | Intensity |
| 0.2 | 10 | 0.25 | Gradient |
| 0.1 | 4 | None | Intensity |
All values for lattice diameter were set to 1.5 x Step_size. Regularization parameters of stiffness, weight, and similarity were set to 0.98, 0.8, and 0.8, respectively.
