Table 3.
Top 20 genes located in the QTL region with the most significant difference between the induced sensitive sample relative to the un-induced sensitive sample 2 days after the cold induction.
| B. oleracea annotation | Homolog in Arabidopsis thaliana | TAIR annotation | Log2 fold change | Adjusted P-value |
|---|---|---|---|---|
| gBol042544 | - | - | 1.867 | 2.61E-07 |
| gBol042553 | AT2G07690 | MCM5 Minichromosome maintenance family protein | -1.329 | 1.41E-03 |
| gBol035542 | AT3G13650 | Disease resistance-responsive family protein | 1.294 | 1.99E-03 |
| gBol006646 | AT5G61810 | Mitochondrial substrate carrier family protein | 1.879 | 7.37E-03 |
| gBol022897 | AT3G18280 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | 1.94 | 1.09E+02 |
| gBol035492 | AT3G12860 | NOP56-like pre RNA processing ribonucleoprotein | -1.713 | 1.27E+02 |
| gBol035512 | AT3G13080 | ATMRP3, MRP3, ABCC3 multidrug resistance-associated protein 3 | -1.51 | 1.74E+02 |
| gBol030686 | AT4G02060 | PRL Minichromosome maintenance family protein | -1.274 | 1.51E+03 |
| gBol035455 | AT3G12280 | RBR1 retinoblastoma-related 1 | -1.382 | 1.52E+03 |
| gBol015863 | AT5G64420 | DNA polymerase V family | -1.343 | 1.55E+04 |
| gBol030685 | AT4G02070 | MSH6, MSH6-1, ATMSH6 MutS homolog 6 | -1.225 | 1.92E+04 |
| gBol010776 | AT4G01150 | Unknown protein | 1.392 | 2.73E+04 |
| gBol026646 | AT3G20630 | UBP14, TTN6, ATUBP14, PER1 ubiquitin-specific protease 14 | -1.05 | 8.65E+04 |
| gBol026545 | AT3G22660 | rRNA processing protein-related | -1.42 | 1.37E |
| gBol026635 | AT3G21055 | PSBTN photosystem II subunit T | 1.72 | 2.25E |
| gBol022890 | AT3G18524 | MSH2, ATMSH2 MutS homolog 2 | -1.166 | 2.89E |
| gBol026595 | AT3G21720 | ICL isocitrate lyase | -1.295 | 3.31E |
| gBol012448 | AT2G17720 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | 1.311 | 3.42E |
| gBol042665 | AT2G16440 | MCM4 Minichromosome maintenance family protein | -1.284 | 4.23E |
The annotation of the genes in B. oleracea, A. thaliana, and their TAIR annotations are indicated.