Table 4.
Top 20 genes located in the QTL region with the most significant difference between the induced sensitive sample relative to the un-induced sensitive sample seven after the cold induction.
| B. oleracea annotation | Homolog in Arabidopsis thaliana | Go annotation | Log2 fold change | Adjusted P-value |
|---|---|---|---|---|
| gBol035557 | AT3G13960 | Growth-regulating factor 5 | -5.758 | 1.10E-52 |
| gBol042608 | AT2G14900 | Gibberellin-regulated family protein | 1.849 | 5.88E-36 |
| gBol030685 | AT4G02070 | MSH6, MSH6-1, ATMSH6 MutS homolog 6 | -1.92 | 9.47E-22 |
| gBol042665 | AT2G16440 | MCM4 Minichromosome maintenance family protein | -1.884 | 2.02E-18 |
| gBol030686 | AT4G02060 | PRL Minichromosome maintenance family protein | -1.956 | 4.26E-17 |
| gBol010669 | AT3G02480 | Late embryogenesis abundant protein (LEA) family protein | 8.359 | 4.95E-17 |
| gBol022964 | AT3G17010 | AP2/B3-like transcriptional factor | -2.869 | 2.44E-16 |
| gBol042553 | AT2G07690 | MCM5 Minichromosome maintenance family protein | -1.755 | 6.57E-16 |
| gBol035492 | AT3G12860 | NOP56-like pre RNA processing ribonucleoprotein | -2.183 | 1.91E-15 |
| gBol042690 | AT2G16890 | UDP-Glycosyltransferase superfamily protein | 3.608 | 3.35E-15 |
| gBol022890 | AT3G18524 | MSH2, ATMSH2 MutS homolog 2 | -1.69 | 6.85E-15 |
| gBol022986 | AT3G16360 | AHP4 HPT phosphotransmitter 4 | 2.756 | 8.65E-11 |
| gBol042483 | AT3G25190 | Vacuolar iron transporter (VIT) family protein | 1.745 | 9.47E-10 |
| gBol010741 | AT3G02000 | ROXY1 Thioredoxin superfamily protein | -3.762 | 2.42E-9 |
| gBol035580 | AT3G14415 | Aldolase-type TIM barrel family protein | -1.328 | 8.16E-9 |
| gBol035541 | AT3G13640 | ATRLI1, RLI1 RNAse l inhibitor protein 1 | -2.48 | 1.02E-8 |
| gBol010957 | AT3G10690 | GYRA DNA GYRASE A | -1.409 | 2.26E-8 |
| gBol035497 | AT3G12970 | Unknown protein | -2.438 | 2.70E-8 |
| gBol035513 | AT3G13130 | Unknown protein; | 6.022 | 1.14E-7 |
The annotation of the genes in B. oleracea, A. thaliana, and their GO annotations are indicated.