Table 3.
Prediction of target genes using TargetRNA2 and IntaRNA.
| sRNA candidate name | Total number of target genes predicted by TargetRNA2 | Total number of target genes predicted by CopraRNA | Number of common targets predicted by both programs | List of target genes predicted by both programs | Protein name |
|---|---|---|---|---|---|
| Rp_sR17 | 19 | 44 | 1 | H375_290 | Protein translocase subunit SecD |
| Rp_sR60 | 23 | 40 | 6 | H375_7590 | 3-oxoacyl-[acyl-carrier-protein] synthase 2 |
| H375_4980 | SSU ribosomal protein S7p (S5e | ||||
| H375_3020 | Putative TolA protein | ||||
| H375_1850 | Phosphatidate cytidylyltransferase | ||||
| H375_8280 | Putative cytochrome c-type biogenesis protein related to CcmF | ||||
| H375_8880 | LSU ribosomal protein L6p (L9e) | ||||
| Rp_sR67 | 30 | 37 | 7 | H375_8490 | Methionine–tRNA ligase |
| H375_6610 | Alanine–tRNA ligase | ||||
| H375_4810 | Hypothetical protein H375 | ||||
| H375_2550 | Reductase | ||||
| H375_1110 | tRNA pseudouridine synthase B H375 | ||||
| H375_3730 | Uncharacterized protein RP244 of Rickettsia | ||||
| H375_6090 | ATP synthase subunit c H375 |
Listed are the common set of targets predicted by both TargetRNA2 and IntaRNA. The total number of targets predicted by TargetRNA2 is shown next to the total number of targets predicted by IntaRNA. The number of common targets is documented next to a list of those common targets and their functions.