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. 2016 Jun 8;14:13. doi: 10.1186/s13053-016-0053-6

Table 1.

SDHB, SDHC, and SDHD variants identified in Danish patients with neuroendocrine cancer. PCC pheochromocytoma, PGL paraganglioma, LGR large genomic rearrangement; a identified in homozygote state; N/A not accessible. Results from In silico data analyses from A-GVGD, SIFT, and PolyPhen-2 are listed in the corresponding columns. Each variant is classed according to the five-tiered scheme

Family ID Disease Age (yr) Gene Exon Nucleotide Protein Mutation type A-GVGD SIFT PolyPhen-2 Frequency (ExAC) Class References
1 PGL 51 SDHB 1 c.-1-?_72+?del - LGR - - - - 5 [21, 22]
2 PGL 36 SDHB 1–7 c.-1-?_765+?del - LGR - - - - 5 Novel
3 PGL 29 SDHB 1 c.3G > A p.Met1? Start loss - - - - 4 [24, 32, 43]
4 PGL 34 SDHB 3 c.203G > A p.Cys68Tyr Missense C65 Deleterious Possibly damaging - 4 [30, 43]
5 PGL 16 SDHB 4–5 c.287-?_540+?del - LGR - - - - 5 Novel
6 PCC 51 SDHB 4 c.300T > C p.Ser100Ser Synonymous - - - 0.15 % 3 [30]
7 PCC 29 SDHB 4 c.416T > C p.Leu139Pro Missense C65 Deleterious Possibly damaging - 4 Novel
8 PGL 12 SDHB 6 c.566G > A p.Cys189Tyr Missense C65 Deleterious Possibly damaging - 3 Novel
9 PGL 39 SDHB 7 c.653G > A p.Trp218Ter Nonsense - - - - 5 [30]
10 PGL 41 SDHC 2 c.43C > T p.Arg15Ter Nonsense - - - 0.00082 % 5 [3133]
11 PGL 75 SDHC - c.78-19C > T - - - - - 0.021 % 3 Novel
12 PGL N/A SDHC 3 c.148C > T p.Arg50Cys Missense C25 Deleterious Probably damaging - 4 [32, 43]
13 PGL 64 SDHC 4 c.191_207del17 p.Pro64LeufsTer28 Frameshift - - - - 5 Novel
14 PCC 31 SDHC 5 c.242G > Ta p.Gly81Val Missense C0 Deleterious Probably damaging 0.00082 % 3 Novel
15 PCC 74 SDHC 6 c.496C > G p.Leu166Val Missense C0 Tolerated Benign - 3 Novel
16 PGL 41 SDHD 2 c.149A > G p.His50Arg Missense C0 Tolerated Probably damaging 0.65 % 2 [22, 30, 4348]
17 PCC 37 SDHD 3 c.274G > T p.Asp92Tyr Missense C65 Deleterious Probably damaging - 5 [4, 36, 3843]
18 PGL 41 SDHD 4 c.341A > G p.Tyr114Cys Missense C65 Deleterious Probably damaging - 5 [24, 37, 42, 4953]