Table 1.
List of 43 yeast and 48 fungal species considered in the analyses of amino acid composition and in pairwise shared orthologs.
| IDENT | #PROTS | SIZE (MB) | GC% | SPECIES (YEAST) |
|---|---|---|---|---|
| SACE | 5769 | 12.2 | 38.2 | Saccharomyces_cerevisiae |
| SAAR | 5527 | 11.6195 | 37.9 | Saccharomyces_arboricola |
| NACA | 5592 | 11.2195 | 36.7 | Naumovozyma_castellii_CBS_4309 |
| KAZA | 5378 | 11.13 | 36.2 | Kazachstania_africana_CBS_2517 |
| CAGL | 5204 | 12.3182 | 38.6 | Candida_glabrata |
| NADE | 5112 | 10.9691 | 38.5 | Nakaseomyces_delphensis |
| DECA | 6219 | 11.76 | 36.7 | Debaryomyces_carsonii |
| PISO | 11175 | 21.4596 | 41.3 | Pichia_sorbitophila |
| KLLA | 5083 | 10.6891 | 38.7 | Kluyveromyces_Lactis |
| PIPA | 5040 | 9.2163 | 41.1 | Pichia_pastoris_GS115 |
| PIST | 5816 | 15.4411 | 41.1 | Pichia_Stipidis |
| CATE | 6985 | 10.75 | 42.2 | Candida_tenuis |
| CAOR | 5677 | 12.6594 | 36.9 | Candida_orthopsilosis |
| SPPA | 5983 | 13.1821 | 37.0 | Spathaspora_passalidarum_NRRL_Y-27907 |
| LOEL | 5796 | 15.4 | 36.7 | Lodderomyces_elongisporus |
| CAPA | 5817 | 12.9984 | 38.7 | Candida_parapsilosis |
| DEFA | 6182 | 12.00 | 34.8 | Debaryomyces_fabryi |
| DEHA | 6272 | 12.2 | 36.3 | Debaryomyces_hansenii |
| DETY | 6747 | 12.40 | 35.6 | Debaryomyces_tyrocola |
| CATR | 6258 | 14.5798 | 33.0 | Candida_Tropicalis |
| CAAL | 6112 | 14.4176 | 33.3 | Candida_albicans_WO-1 |
| CADU | 5983 | 14.6184 | 33.2 | Candida_dubliniensis_CD36_uid38659 |
| STAM | 5790 | unk | unk | Starmera_amethionina |
| NADA | 5772 | 13.5275 | 34.0 | Naumovozyma_dairenensis_CBS_421 |
| TEPH | 5250 | 12.1 | 33.5 | Tetrapisispora_phaffii_CBS_4417 |
| TEBL | 5388 | 14.0486 | 31.7 | Tetrapisispora_blattae |
| CAGU | 5920 | 10.61 | 43.6 | Candida_guilliermondii |
| SCPO | 5142 | 12.6 | 36.0 | Schizosaccharomyces_pombe |
| DEBR | 5255 | 13.0582 | 39.1 | Dekkera_Bruxellensis_STO5_12_22 |
| ERCY | 4434 | 9.6694 | 40.3 | Eremothecium_cymbalariae_DBVPG_7215 |
| SAKL | 5306 | 11.3458 | 41.5 | Saccharomyces_kluyveri |
| TODE | 4972 | 9.2207 | 42.0 | Torulaspora_delbrueckii_CBS_1146 |
| ZYRO | 4997 | 9.7646 | 39.1 | Zygosaccharomyces_rouxii |
| KANA | 5321 | 10.8458 | 45.8 | Kazachstania_naganishii_CBS_8797 |
| CYJA | 6038 | 13.0184 | 43.6 | Cyberlindnera_jadinii |
| KUCA | 6031 | 11.3712 | 45.5 | Kuraishia_capsulata |
| OGPA | 5325 | 8.8786 | 47.8 | Ogataea_parapolymorpha_DL-1 |
| KLTH | 5103 | 10.3928 | 47.2 | Kluyveromyces_thermotolerans |
| CALU | 5936 | 12.1148 | 44.3 | Candida_lusitaniae |
| SCJA | 5167 | 11.7332 | 41.5 | Schizosaccharomyces_japonicus_yfs275_5 |
| ERGO | 4718 | 9.0957 | 51.7 | Eremothecium_gossypii_(AGOS) |
| ARAD | 6152 | 11.8046 | 48.1 | Arxula_adeninivorans |
| YALI | 6434 | 20.5029 | 49.0 | Yarrowia_lipolytica |
| IDENT | #PROTS | SIZE (MB) | GC% | SPECIES (FUNGI) |
|---|---|---|---|---|
| CATH | 11703 | 28.1975 | 42.5 | Calcarisporiella_thermophila |
| BOCI | 16389 | 42.6630 | 39.1 | Botrytis_cinerea |
| FUGR | 13321 | 36.3130 | 48.1 | Fusarium_graminearum |
| GIZE | 11578 | 36.2585 | 47.8 | Gibberella_zeae_PH-1_uid243 |
| FUVE | 14195 | 41.1043 | 48.6 | Fusarium_verticillioides |
| FUOX | 17608 | 57.7206 | 47.4 | Fusarium_oxysporum |
| ASFL | 12587 | 36.7902 | 48.2 | Aspergillus_flavus |
| ASOR | 12063 | 37.0886 | 48.2 | Aspergillus_oryzae |
| PECH | 11396 | 31.3410 | 48.6 | Penicillium_chrysogenum |
| PERU | 12790 | 32.2237 | 48.9 | Penicillium_rubens |
| ASTE | 10406 | 29.3312 | 52.6 | Aspergillus_terreus |
| ASNG | 8592 | 34.0066 | 50.2 | Aspergillus_niger |
| ASNI | 9410 | 29.7113 | 50.0 | Aspergillus_nidulans |
| ASFU | 9630 | 29.3849 | 48.8 | Aspergillus_fumigatus |
| NEFI | 10407 | 32.5517 | 49.4 | Neosartorya_fischeri |
| ASCL | 9120 | 27.8594 | 49.1 | Aspergillus_clavatus |
| COIM | 9910 | 28.9479 | 46.0 | Coccidioides_immitis_RS |
| PABR | 8390 | 29.9525 | 43.6 | Paracoccidioides_brasiliensis |
| FOME | 11338 | 63.3544 | 40.8 | Fomitiporia_mediterranea_MF3-22 |
| COCI | 13544 | 36.2944 | 51.6 | Coprinus_cinereus |
| THAU | 10450 | 31.4823 | 49.0 | Thermoascus_aurantiacus |
| THLA | 8133 | 19.9438 | 51.0 | Thermomyces_lanuginosus |
| TATH | 7920 | 19.8875 | 51.7 | Talaromyces_thermophilus |
| POAN | 10219 | 33.7760 | 51.5 | Podospora_anserina_S_mat+ |
| NECR | 9822 | 40.4631 | 48.4 | Neurospora_crassa |
| CRGA | 6565 | 18.3748 | 47.8 | Cryptococcus_gattii_WM276 |
| CRNE | 7302 | 19.0519 | 48.5 | Cryptococcus_neoformans_var._JEC21 |
| MIVI | 7819 | 26.1389 | 53.4 | Microbotryum_violaceum |
| USMA | 6522 | 19.6439 | 53.9 | Ustilago_maydis |
| SPRE | 6673 | 18.4769 | 58.6 | Sporisorium_reilianum |
| THER | 9815 | 36.9196 | 54.4 | Thielavia_terrestris |
| THNT | 9204 | 40.6623 | 51.2 | Thielavia_antarctica |
| CHTH | 8280 | 28.3147 | 52.5 | Chaetomium_thermophilum_ATTC1651 |
| SCTH | 10945 | 29.3248 | 55.0 | Scytalidium_thermophilum |
| MYTH | 9099 | 38.7442 | 51.4 | Myceliophthora_thermophila_ATCC_42464 |
| CHGL | 11124 | 34.8869 | 54.6 | Chaetomium_globosum |
| COTH | 10644 | 33.3614 | 51.0 | Corynascus_thermophilus |
| MYRT | 8635 | 31.6872 | 52.0 | Myriococcum_thermophilum |
| THST | 10387 | 29.5796 | 56.9 | Thermomyces_stellatus |
| VEDA | 10535 | 33.9000 | 54.2 | Verticillium_alfalfae |
| MAOR | 12755 | 41.0278 | 51.5 | Magnaporthe_oryzae |
| MAGR | 11054 | 41.6955 | 51.3 | Magnaporthe_grisea |
| FUPG | 12447 | 36.9329 | 47.7 | Fusarium_pseudograminearum_CS3096 |
| PNJI | 3520 | 8.1799 | 28.3 | Pneumocystis_jirovecii |
| PNCA | 6874 | 6.3 | 29.8 | Pneumocystis_carinii |
| PNMU | 3838 | 7.4514 | 26.9 | Pneumocystsis_murina |
| TADE | 4663 | 13.7735 | 49.0 | Taphrina_deformans_JCM_22205 |
| ZYTR | 10931 | 39.6863 | 52.1 | Zymoseptoria_tritici |
Note: Each species is characterized by its identification (represented by four-letter code), number of predicted proteins, size in Mbp, and GC content. References relative to the species are shown in Supplementary Table 1.