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. Author manuscript; available in PMC: 2016 Oct 7.
Published in final edited form as: Anal Chem. 2016 May 23;88(11):5725–5732. doi: 10.1021/acs.analchem.5b04858

Table 3.

Comparison with manual annotation

MDA-MB-453 MDA-MB-361
Match with correct peptide and correct glycan 121 (116*) Total
137
107 (86*) Total
143
Match with correct glycan but wrong peptide 3 0
Match with correct glycan with no peptide assigned 1 4
Match wrong glycans 6 10
Partially sequenced glycans 6 22
*

Predicted as True with high confidence by our machine learning model.