Table 1.
Primer name | Primer sequence | Length (pb) | Tm (°C) | ΔG of homodimers at 3′ (Kcal/mol) | ΔG of heterodimers at 3′ (Kcal/mol) | Conc. (nM) |
---|---|---|---|---|---|---|
DENV-For | TTGAGTAAACYRTGCTGCCTGTAGCTC | 27 | 58.4–62.3 | −6.34 | −6.34 | 80 |
DENV-Rev | GAGACAGCAGGATCTCTGGTCTYTC | 25 | 58.6–59.8 | −6.28 | 130 | |
WNV-For | GGTGGATTTGGTTCTCGAAGGCG | 23 | 60.4 | −3.61 | −3.61 | 60 |
WNV-Rev | AGGGTCAGCACGTTTGTCATTGTG | 24 | 60 | −1.95 | 120 | |
RICK-For | TATGCTTGCGGCTGTCGGTTCTC | 23 | 61.7 | −3.14 | −3.61 | 1000 |
RICK-Rev | TTGCGGTAAGTTCGTAGTCTGCTTCTT | 27 | 59.9 | −3.61 | 1000 | |
LEP-For | AGCAGCCGCGGTAATACGTATGG | 23 | 61.3 | −3.14 | −3.55 | 1000 |
LEP-Rev | TTTAGGGCGTGGATTACTGGGG | 22 | 59 | −0.96 | 1000 |
Tm melting temperature, Conc. concentration used in this study, ΔG Gibbs energy