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. 2016 Mar 21;291(21):11198–11215. doi: 10.1074/jbc.M115.707653

TABLE 3.

Comparison of KD, IC50, and solubility parameter values for inhibitors of Scabin

Inhibitor KDa IC50b Kic pIC50d ΔTme
μm μm μm °C
PJ34 14 ± 0.5 12 ± 1 3 ± 0.2 4.9 2.4 ± 0.3
P6-C 25 ± 1 89 ± 4 19 ± 1 4.1 2.2 ± 0.6
P6-D 42 ± 5 97 ± 7 18 ± 1 4.0 1.8 ± 0.4
P6-E 50 ± 6 119 ± 2 24 ± 0.3 3.9 2.6 ± 0.7
P6-F NDf 38 ± 2 7 ± 0.2 4.4 1.5 ± 0.5

a The binding affinity of inhibitors to Scabin was measured by the quenching of the intrinsic Trp fluorescence caused by the binding of the ligand to the enzyme active site.

b The IC50 values were determined by fitting each dose-response curve to a Boltzmann sigmoidal function in MicroCal Origin version 8.0.

c The inhibition constant (Ki) was calculated from the experimentally determined IC50 values according to the relationship, Ki = IC50/(1 + ([SNAD]/Km(NAD)) using fixed values for [Scabin] = 10 μm, [ϵ-NAD+] = 400 μm, and Km(ϵ-NAD+) = 276 μm.

d The pIC50 values were calculated from the IC50 values as follows, pIC50 = −log IC50. The higher the pIC50 value, the lower dose that is required for 50% inhibition of Scabin toxin activity.

e The ΔTm value (°C) was determined by the expression, ΔTm°C(Scabin-inhibitor) − ΔTm°C (Scabin-apo).

f Not determined.