Table 1.

The number of significant SNPs (5 % and 1 % genome-wise FDR) using single SNP regression mixed linear model on imputed BovineHD (777 k) genotypes in Holstein dairy cattle

Trait	Heritability	No. of sig SNPs (1 % FDR)	No. of sig. SNPs (5 % FDR)
Milk production	0.410	221	292
Fat production	0.340	595	813
Protein production	0.370	41	87
Fat deviation (%)	0.370	998	1,230
Protein deviation (%)	0.370	912	1,416
Daughter fertility	0.070	0	0
First service to calving interval (heifer)	0.033	0	0
Calving to first service interval	0.072	8	20
Days open	0.102	8	0