Table 2.
# CpGs | 0 | 1 | 2 |
---|---|---|---|
Disease status | |||
Control | b 0 | b 0 + b 1 | b 0 + 2b 1 |
Case | b 0 | b 0 + b 1 + b 2 | b 0 + 2b 1+ 2b 2 |
Difference | 0 | b 2 | 2b 2 |
Note: b 0 is the intercept, b 1 is the effect of the SNP and b 2 the effect of the disease on methylation levels.