Table 1. Selection and targeting efficiencies in the CRISPR/Cas9 mutagenic screens.
Gene | Type | Amounts of sgRNA (Cas9 protein) |
|||||
---|---|---|---|---|---|---|---|
Control | 10 μg (7.5 μg) | 20 μg (15 μg) | 40 μg (30 μg) | Total | |||
MAA7-1 | Selection | Colonies | 0 | 1 | 2 | –a | 3 |
Efficiency (cell−1)b | 0 | 1.1 × 10−8 | 6.7 × 10−8 | – | 3.3 × 10−8 | ||
Targeting | Colonies | 0 | 0 | 0 | – | 0 (0%)c | |
Efficiency (cell−1) | 0 | 0 | 0 | – | 0 | ||
MAA7-2 | Selection | Colonies | 1 | 6 | 5 | 9 | 20 |
Efficiency (cell−1) | 1.1 × 10−8 | 6.7 × 10−8 | 5.6 × 10−8 | 1.0 × 10−7 | 2.2 × 10−7 | ||
Targeting | Colonies | 0 | 0 | 2 | 6 | 8 (40%) | |
Efficiency (cell−1) | 0 | 0 | 2.2 × 10−8 | 6.7 × 10−8 | 8.9 × 10−8 | ||
CpSRP43 | Selection | Colonies | 65 | 34 | 108 | 76 | 218 |
Efficiency (cell−1) | 7.2 × 10−7 | 3.8 × 10−7 | 1.2 × 10−6 | 8.4 × 10−7 | 2.4 × 10−6 | ||
Targeting | Colonies | 0 | 3 | 0 | 0 | 3 (1.4%) | |
Efficiency (cell−1) | 0 | 3.3 × 10−8 | 0 | 0 | 3.3 × 10−8 | ||
ChlM | Selection | Colonies | – | 6000 | – | – | 6000 |
Efficiency (cell−1) | – | 3.0 × 10−5 | – | – | 3.0 × 10−5 | ||
Targeting | Colonies | – | 10 | – | – | 10 (0.17%) | |
Efficiency (cell−1) | – | 5.0 × 10−8 | – | – | 5.0 × 10−8 |
aNot tested.
bThe efficiency was calculated by dividing the number of colonies with that of cells used for electroporation.
cTargeting percentage was calculated by dividing the number of targeted colonies with that of selected colonies.