Skip to main content

View full-text article in PMC

. 2016 Jun 7;110(11):2419–2429. doi: 10.1016/j.bpj.2016.04.018

Table 1.

p7 Consensus Sequences for HCV Genotypes 1–4

Genotype	p7 Protein Sequence
All	ALENLVVLNAASAAGTHGILWFLVFFCAAWYVKGRLVPGATYSLLGLWPLLLLLLALPQRAYA

1	ALENLVLLNAASLAGTHGLVSFLVFFCFAWYLKGRWVPGAAYAVYGMWPLLLLLLALPQRAYA
1a^a	ALENLVILNAASLAGTHGLVSFLVFFCFAWYLKGRWVPGAVYAFYGMWPLLLLLLALPQRAYA
1b	ALENLVVLNAASLAGAHGILSFLVFFCAAWYIKGRLVPGAAYALYGVWPLLLLLLALPPRAYA
1c	ALENLIVLNAASLVGTHGIVPFFIFFCAAWYLKGKWAPGLAYSVYGMWPLLLLLLALPQRAYA

2	ALEKLVILHAASAASANGPLWFFIFFVAAWYIKGRVVPLATYSLLGLWSFLLLVLALPQQAYA
2a^a	ALEKLVVLHAASAASCNGFLYFVIFFVAAWYIKGRVVPLATYSLTGLWSFGLLLLALPQQAYA
2b	ALEKLIILHSASAASANGPLWFFIFFTAAWYLKGRVVPVATYSVLGLWSFLLLVLALPQQAYA
2c	ALEKLVILHAASAASSNGLLYFILFFVAAWCIKGRAVPMVTYTLLGCWSFVLLLMALPHQAYA

3	ALENLVTLNAVAAAGTHGIGWYLVAFCAAWYVRGKLVPLVTYSLTGLWSLALLVLLLPQRAYA
3a^a	ALENLVTLNAVAAAGTHGIGWYLVAFCAAWYVRGKLVPLVTYSLTGLWSLALLVLLLPQRAYA
3b	AMENLVMLNALSAAGQQGYVWYLVAFCAAWHIRGKLVPLITYGLTGLWPLALLDLLLPQRAYA

4	ALSNLININAASAAGTHGFWYAIFFICIAWHVKGRLPAAATYAACGMWPLLLLLLMLPERAYA
4a^a	ALSNLININAASAAGAQGFWYAILFICIVWHVKGRFPAAAAYAACGLWPCFLLLLMLPYRAYA

p7 protein sequences after Carrère-Kremer et al. (19). Consensus sequences are shown in bold.

^a

Sequences used in this study.